YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|89103007, gi\|...
Organism:	Yersinia pestis biovar Orientalis str. IP275
Length:	282 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

[What does the above image mean?]

[Show Ginzu Version Information]

Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|89103007, gi|....

Description	E-value	Query Range	Subject Range
gi\|157156427, gi... - gi\|75189438\|ref\|ZP_00702705.1\| COG2175: Probable taurine catabolism dioxygenase [Escherichia coli E2...	1.0E-80	[1..281]	[1..281]
gi\|74310938, gi\|... - gi\|74310938\|ref\|YP_309357.1\| taurine dioxygenase [Shigella sonnei Ss046], gi\|73854415\|gb\|AAZ87122.1\|...	1.0E-80	[1..281]	[1..281]
gi\|238899661, gi... - gi\|238899661\|ref\|YP_002925457.1\| taurine dioxygenase, 2-oxoglutarate-dependent [Escherichia coli BW2... EG12423 - taurine dioxygenase, 2-oxoglutarate-dependent / Taurine /alpha-ketoglutarate dioxygenase gi\|188496113, gi... - gi\|75512431\|ref\|ZP_00734970.1\| COG2175: Probable taurine catabolism dioxygenase [Escherichia coli 53... gi\|89107239, gi\|... - gi\|89107239\|ref\|AP_001019.1\| taurine dioxygenase, 2-oxoglutarate-dependent [Escherichia coli str. K-... TAUD_ECOLI - Alpha-ketoglutarate-dependent taurine dioxygenase (EC 1.14.11.17) (2-aminoethanesulfonate dioxygenas... EG12423 - taurine dioxygenase, 2-oxoglutarate-dependent / Taurine /alpha-ketoglutarate dioxygenase gi\|170079957, gi... - gi\|170079957\|ref\|YP_001729277.1\| taurine dioxygenase, 2-oxoglutarate-dependent [Escherichia coli str... gi\|170683535, gi... - gi\|170683535\|ref\|YP_001742500.1\| taurine dioxygenase [Escherichia coli SMS-3-5], gi\|170521253\|gb\|ACB...	1.0E-80	[1..281]	[1..281]
gi\|189373761, gi... - gi\|189373761\|gb\|EDU92177.1\| taurine dioxygenase [Escherichia coli O157:H7 str. EC869], gi\|168786201\|... gi\|188999387, gi... - gi\|188999387\|gb\|EDU68373.1\| taurine dioxygenase [Escherichia coli O157:H7 str. EC4076], gi\|168783221... gi\|169756183, gi... - gi\|170021255\|ref\|YP_001726209.1\| taurine dioxygenase [Escherichia coli ATCC 8739], gi\|169756183\|gb\|A... gi\|168800238, gi... - gi\|189377380\|gb\|EDU95796.1\| taurine dioxygenase [Escherichia coli O157:H7 str. EC508], gi\|168800238\|... gi\|208726398, gi... - gi\|208806597\|ref\|ZP_03248934.1\| taurine dioxygenase [Escherichia coli O157:H7 str. EC4206], gi\|20872... gi\|13359879, gi\|... - gi\|15829676\|ref\|NP_308449.1\| taurine dioxygenase [Escherichia coli O157:H7 str. Sakai], gi\|13359879\|... gi\|195938569 - gi\|195938569\|ref\|ZP_03083951.1\| taurine dioxygenase [Escherichia coli O157:H7 str. EC4024] gi\|124528915, gi... - gi\|124528915\|ref\|ZP_01700100.1\| Taurine dioxygenase [Escherichia coli B], gi\|124500252\|gb\|EAY47728.1... gi\|208822961, gi... - gi\|208822961\|ref\|ZP_03263279.1\| taurine dioxygenase [Escherichia coli O157:H7 str. EC4042], gi\|20873... gi\|208815909, gi... - gi\|208815909\|ref\|ZP_03257088.1\| taurine dioxygenase [Escherichia coli O157:H7 str. EC4045], gi\|20873... gi\|188015925, gi... - gi\|188015925\|gb\|EDU54047.1\| taurine dioxygenase [Escherichia coli O157:H7 str. EC4113], gi\|168749818... gi\|189368052, gi... - gi\|189368052\|gb\|EDU86468.1\| taurine dioxygenase [Escherichia coli O157:H7 str. EC4501], gi\|168761560... gi\|168756897, gi... - gi\|189355960\|gb\|EDU74379.1\| taurine dioxygenase [Escherichia coli O157:H7 str. EC4401], gi\|168756897... gi\|168776339, gi... - gi\|187768267\|gb\|EDU32111.1\| taurine dioxygenase [Escherichia coli O157:H7 str. EC4196], gi\|168776339... gi\|189362420, gi... - gi\|189362420\|gb\|EDU80839.1\| taurine dioxygenase [Escherichia coli O157:H7 str. EC4486], gi\|168768306... gi\|209744492, gi... - pir\|\|B85532 taurine dioxygenase, 2-oxoglutarate-dependent [imported] - Escherichia coli (strain O157... gi\|15800098, gi\|... - gi\|15800098\|ref\|NP_286110.1\| taurine dioxygenase [Escherichia coli O157:H7 EDL933], gi\|12513209\|gb\|A... gi\|13359879, gi\|... - gi\|15829676\|ref\|NP_308449.1\| taurine dioxygenase [Escherichia coli O157:H7], gi\|13359879\|dbj\|BAB3384... gi\|217325762, gi... - gi\|217325762\|ref\|ZP_03441846.1\| taurine dioxygenase [Escherichia coli O157:H7 str. TW14588], gi\|2173... gi\|209160608, gi... - gi\|209399208\|ref\|YP_002269009.1\| taurine dioxygenase [Escherichia coli O157:H7 str. EC4115], gi\|2091... tr\|A0A0X8UG71\|A0... - Taurine dioxygenase OS=Escherichia coli (strain K12) GN=tauD PE=4 SV=1 gi\|242376150, gi... - gi\|251783877\|ref\|YP_002998181.1\| hypothetical protein B21_00322 [Escherichia coli BL21], gi\|24237615... gi\|194422154, gi... - gi\|83585708\|ref\|ZP_00924350.1\| COG2175: Probable taurine catabolism dioxygenase [Escherichia coli 10... gi\|253774647, gi... - gi\|254287240\|ref\|YP_003052988.1\| taurine dioxygenase [Escherichia coli BL21(DE3)], gi\|253976547\|gb\|A... gi\|254160437, gi... - gi\|254160437\|ref\|YP_003043545.1\| taurine dioxygenase [Escherichia coli B str. REL606], gi\|253972338\|... gi\|254590948, gi... - gi\|254791548\|ref\|YP_003076385.1\| taurine dioxygenase, 2-oxoglutarate-dependent [Escherichia coli O15...	2.0E-80	[1..281]	[1..281]
gi\|209917581, gi... - gi\|209917581\|ref\|YP_002291665.1\| taurine dioxygenase [Escherichia coli SE11], gi\|209910840\|dbj\|BAG75... gi\|218359699, gi... - gi\|218552931\|ref\|YP_002385844.1\| taurine dioxygenase [Escherichia coli IAI1], gi\|218359699\|emb\|CAQ97... gi\|193065162, gi... - gi\|75256745\|ref\|ZP_00728350.1\| COG2175: Probable taurine catabolism dioxygenase [Escherichia coli E2... gi\|190903240, gi... - gi\|75230098\|ref\|ZP_00716602.1\| COG2175: Probable taurine catabolism dioxygenase [Escherichia coli B7... gi\|194428826, gi... - gi\|75209929\|ref\|ZP_00710118.1\| COG2175: Probable taurine catabolism dioxygenase [Escherichia coli B1... gi\|157159884, gi... - gi\|75194589\|ref\|ZP_00704659.1\| COG2175: Probable taurine catabolism dioxygenase [Escherichia coli HS...	2.0E-80	[1..281]	[1..281]
gi\|110342225, gi... - gi\|110640633\|ref\|YP_668361.1\| taurine dioxygenase [Escherichia coli 536], gi\|110342225\|gb\|ABG68462.1... gi\|191173476, gi... - gi\|75238700\|ref\|ZP_00722688.1\| COG2175: Probable taurine catabolism dioxygenase [Escherichia coli F1...	2.0E-80	[1..280]	[1..280]
gi\|81244269, gi\|... - gi\|82542858\|ref\|YP_406805.1\| taurine dioxygenase [Shigella boydii Sb227], gi\|81244269\|gb\|ABB64977.1\|...	2.0E-80	[1..281]	[1..281]
gi\|237707642, gi... - gi\|237707642\|ref\|ZP_04538123.1\| taurine dioxygenase [Escherichia sp. 3_2_53FAA], gi\|226898852\|gb\|EEH... gi\|115511759, gi... - gi\|117622635\|ref\|YP_851548.1\| taurine dioxygenase [Escherichia coli APEC O1], gi\|115511759\|gb\|ABI998... gi\|91209433, gi\|... - gi\|91209433\|ref\|YP_539419.1\| taurine dioxygenase [Escherichia coli UTI89], gi\|91071007\|gb\|ABE05888.1... gi\|218557281, gi... - gi\|218557281\|ref\|YP_002390194.1\| taurine dioxygenase [Escherichia coli S88], gi\|218364050\|emb\|CAR017...	3.0E-80	[1..281]	[1..281]
gi\|75237247, gi\|... - gi\|75237247\|ref\|ZP_00721294.1\| COG2175: Probable taurine catabolism dioxygenase [Escherichia coli E1...	3.0E-80	[1..281]	[1..281]
gi\|81239999, gi\|... - gi\|82775851\|ref\|YP_402198.1\| taurine dioxygenase [Shigella dysenteriae Sd197], gi\|81239999\|gb\|ABB607...	9.0E-80	[1..281]	[1..281]

Back

Predicted Domain #1

Region A:
Residues: [1-282]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MNERLIVTPL GPHIGALVEN INIAHPLGDS QFEQLYHVLL KHQVLFFRNQ PITPLQQRDL  60
   61 AGRFGDLHIH PVYPHTQECE EIIVLDTADD NPPDNDNWHT DVTFIETPPL GAILAAKQLP 120
  121 TTGGDTLWSS GIAAYDALSA PFKQLLAGLQ AEHDFTKSFP EHKHRTTPEE HQRWLQGKEK 180
  181 NPPLLHPVIR THPVSGRQAL FVNEGFTTRI IGLSDKESEA LLGFLFAHTT KPEFQVRWRW 240
  241 QQDDVAIWDN RVTQHYANAD YLPQRRVMHR ATILGDRPVF RP

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	82.09691
Match:	1gqwA
Description:	Taurine/alpha-ketoglutarate dioxygenase
Matching Structure (courtesy of the PDB):

Predicted functions:

Term	Confidence	Notes
oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors	1.41007985416065	bayes_pls_golite062009
catalytic activity	1.29176034651701	bayes_pls_golite062009
oxidoreductase activity	0.95783232811757	bayes_pls_golite062009
taurine dioxygenase activity	0.594076608400231	bayes_pls_golite062009

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: