YRC Public Data Repository - Protein Structure Prediction

Protein:	RL33_YERPA
Organism:	Yersinia pestis Antiqua
Length:	55 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for RL33_YERPA.

Description	E-value	Query Range	Subject Range
gi\|84690282, gi\|... - gi\|84703848\|ref\|ZP_01017676.1\| 50S ribosomal protein L33 [Parvularcula bermudensis HTCC2503], gi\|846...	6.0E-14	[1..55]	[30..84]
gi\|90437990, gi\|... - gi\|90580919\|ref\|ZP_01236721.1\| 50S ribosomal protein L33 [Vibrio angustum S14], gi\|90437990\|gb\|EAS63... gi\|89047931, gi\|... - gi\|89076360\|ref\|ZP_01162693.1\| 50S ribosomal protein L33 [Photobacterium sp. SKA34], gi\|89047931\|gb\|...	3.0E-13	[1..55]	[1..55]
RL33_VIBCH - 50S ribosomal protein L33 OS=Vibrio cholerae GN=rpmG PE=3 SV=1 gi\|121586300, gi... - gi\|121586300\|ref\|ZP_01676089.1\| ribosomal protein L33 [Vibrio cholerae 2740-80], gi\|121549420\|gb\|EAX... gi\|153214736, gi... - gi\|153214736\|ref\|ZP_01949581.1\| ribosomal protein L33 [Vibrio cholerae 1587], gi\|124115172\|gb\|EAY339... gi\|153221471, gi... - gi\|153221471\|ref\|ZP_01952429.1\| ribosomal protein L33 [Vibrio cholerae MAK 757], gi\|124119655\|gb\|EAY... gi\|153800825, gi... - gi\|153800825\|ref\|ZP_01955411.1\| ribosomal protein L33 [Vibrio cholerae MZO-3], gi\|124123656\|gb\|EAY42... gi\|126509425, gi... - gi\|153820021\|ref\|ZP_01972688.1\| ribosomal protein L33 [Vibrio cholerae NCTC 8457], gi\|126509425\|gb\|E... gi\|153821799, gi... - gi\|229509350\|ref\|ZP_04398833.1\| LSU ribosomal protein L33p [Vibrio cholerae B33], gi\|229353665\|gb\|EE... gi\|254851349, gi... - gi\|75831242\|ref\|ZP_00760508.1\| COG0267: Ribosomal protein L33 [Vibrio cholerae MO10], gi\|254851349\|r... RL33_VIBCM - 50S ribosomal protein L33 OS=Vibrio cholerae serotype O1 (strain M66-2) GN=rpmG PE=3 SV=1 gi\|229506980, gi... - gi\|229506980\|ref\|ZP_04396488.1\| LSU ribosomal protein L33p [Vibrio cholerae BX 330286], gi\|229356085... RL33_VIBCH - 50S ribosomal protein L33 OS=Vibrio cholerae serotype O1 (strain ATCC 39315 / El Tor Inaba N16961) G... gi\|75819381, gi\|... - gi\|75819381\|ref\|ZP_00749464.1\| COG0267: Ribosomal protein L33 [Vibrio cholerae V51], gi\|254225707\|re... gi\|150423740, gi... - gi\|254286325\|ref\|ZP_04961284.1\| ribosomal protein L33 [Vibrio cholerae AM-19226], gi\|197752315\|ref\|Y... gi\|229512788, gi... - gi\|229512788\|ref\|ZP_04402256.1\| LSU ribosomal protein L33p [Vibrio cholerae TMA 21], gi\|229350298\|gb... RL33_VIBC3 - 50S ribosomal protein L33 OS=Vibrio cholerae serotype O1 (strain ATCC 39541 / Classical Ogawa 395 / ... gi\|148873125, gi... - gi\|153831393\|ref\|ZP_01984060.1\| ribosomal protein L33 [Vibrio cholerae 623-39], gi\|148873125\|gb\|EDL7... gi\|229346723, gi... - gi\|229516297\|ref\|ZP_04405745.1\| LSU ribosomal protein L33p [Vibrio cholerae RC9], gi\|229346723\|gb\|EE... gi\|153826356, gi... - gi\|153826356\|ref\|ZP_01979023.1\| ribosomal protein L33 [Vibrio cholerae MZO-2], gi\|149739925\|gb\|EDM54... gi\|229521063, gi... - gi\|229521063\|ref\|ZP_04410484.1\| LSU ribosomal protein L33p [Vibrio cholerae TM 11079-80], gi\|2293419... gi\|121628621, gi... - gi\|75814853\|ref\|ZP_00745397.1\| COG0267: Ribosomal protein L33 [Vibrio cholerae V52], gi\|121729446\|re... gi\|229524829, gi... - gi\|229524829\|ref\|ZP_04414234.1\| LSU ribosomal protein L33p [Vibrio cholerae bv. albensis VL426], gi\|... gi\|229527278, gi... - gi\|229527278\|ref\|ZP_04416671.1\| LSU ribosomal protein L33p [Vibrio cholerae 12129(1)], gi\|229335286\|... gi\|229369143, gi... - gi\|229606488\|ref\|YP_002877136.1\| LSU ribosomal protein L33p [Vibrio cholerae MJ-1236], gi\|229369143\|...	6.0E-13	[1..55]	[1..55]
gi\|15807043, gi\|... - gi\|6459841\|gb\|AAF11599.1\|AE002041_3 ribosomal protein L33 [Deinococcus radiodurans R1], gi\|15807043\|... gi\|28948945, gi\|... - gi\|7473826\|pir\|\|D75321 ribosomal protein L33 - Deinococcus radiodurans (strain R1), gi\|51247398\|pdb\|... gi\|66361047\|pdb\|... - Chain 6, Crystal Structure Of 70s Ribosome With Thrs Operator And Trnas. Large Subunit. The Coordina... gi\|88192402, gi\|... - gi\|88192402\|pdb\|2B9P\|6 Chain 6, 50s Ribosomal Subunit From A Crystal Structure Of The Ribosome In Co...	6.0E-13	[1..54]	[28..82]
RL33_PHOPR - 50S ribosomal protein L33 OS=Photobacterium profundum (strain SS9) GN=rpmG PE=3 SV=1 gi\|148833543, gi... - gi\|149192620\|ref\|ZP_01870770.1\| 50S ribosomal protein L33 [Vibrio shilonii AK1], gi\|148833543\|gb\|EDL... gi\|90323988, gi\|... - gi\|90414932\|ref\|ZP_01222896.1\| 50S ribosomal protein L33 [Photobacterium profundum 3TCK], gi\|9032398... RL33_PHOPR - 50S ribosomal protein L33 OS=Photobacterium profundum GN=rpmG PE=3 SV=1 gi\|84378159, gi\|... - gi\|84386869\|ref\|ZP_00989893.1\| 50S ribosomal protein L33 [Vibrio splendidus 12B01], gi\|84378159\|gb\|E... gi\|85834999, gi\|... - gi\|86147284\|ref\|ZP_01065599.1\| 50S ribosomal protein L33 [Vibrio sp. MED222], gi\|85834999\|gb\|EAQ5314... RL33_VIBTL - 50S ribosomal protein L33 OS=Vibrio tasmaniensis (strain LGP32) GN=rpmG PE=3 SV=1	8.0E-13	[1..55]	[1..55]
gi\|86163693, gi\|... - gi\|87120855\|ref\|ZP_01076747.1\| RpmG protein [Marinomonas sp. MED121], gi\|86163693\|gb\|EAQ64966.1\| Rpm...	2.0E-12	[2..55]	[3..56]
RL33_BIFLO - 50S ribosomal protein L33 OS=Bifidobacterium longum GN=rpmG PE=3 SV=1 RL33_BIFLO - 50S ribosomal protein L33 OS=Bifidobacterium longum (strain NCC 2705) GN=rpmG PE=3 SV=1 gi\|23336434 - gi\|23336434\|ref\|ZP_00121652.1\| COG0267: Ribosomal protein L33 [Bifidobacterium longum DJO10A] gi\|227213107, gi... - gi\|227546450\|ref\|ZP_03976499.1\| ribosomal protein L33 [Bifidobacterium longum subsp. infantis ATCC 5... gi\|223466532, gi... - gi\|223466532\|ref\|ZP_03618068.1\| hypothetical protein BIFBRE_00234 [Bifidobacterium breve DSM 20213],...	3.0E-12	[1..53]	[3..57]
RK33_CYAPA - 50S ribosomal protein L33, cyanelle OS=Cyanophora paradoxa GN=rpl33 PE=3 SV=1	3.0E-12	[2..53]	[4..64]
RL33_VIBFM - 50S ribosomal protein L33 OS=Vibrio fischeri (strain MJ11) GN=rpmG PE=3 SV=1 RL33_VIBF1 - 50S ribosomal protein L33 OS=Vibrio fischeri (strain ATCC 700601 / ES114) GN=rpmG PE=3 SV=1	3.0E-12	[1..55]	[1..55]
gi\|253783292, gi... - gi\|253991842\|ref\|YP_003043198.1\| 50s ribosomal protein l33 [Photorhabdus asymbiotica], gi\|253783292\|... RL33_PHOLL - 50S ribosomal protein L33 OS=Photorhabdus luminescens subsp. laumondii (strain DSM 15139 / CIP 10556... RL33_PHOLL - 50S ribosomal protein L33 OS=Photorhabdus luminescens subsp. laumondii GN=rpmG PE=3 SV=1	3.0E-12	[1..55]	[1..55]

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Predicted Domain #1

Region A:
Residues: [1-55]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAKGVREKIK LVSSAGTGHF YTTTKNKRTK PEKLELKKFD PVVRQHVLYK EAKIK

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	14.522879
Match:	1nkw1
Description:	50S subunit
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits