YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|165936101, gi...
Organism:	Yersinia pestis biovar Orientalis str. IP275
Length:	82 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|165936101, gi....

Description	E-value	Query Range	Subject Range
gi\|238794392, gi... - gi\|77977371\|ref\|ZP_00832821.1\| COG0695: Glutaredoxin and related proteins [Yersinia intermedia ATCC ...	3.0E-28	[1..82]	[1..82]
gi\|77958476, gi\|... - gi\|77958476\|ref\|ZP_00822509.1\| COG0695: Glutaredoxin and related proteins [Yersinia bercovieri ATCC ...	4.0E-28	[1..82]	[1..82]
gi\|77972953, gi\|... - gi\|77972953\|ref\|ZP_00828507.1\| COG0695: Glutaredoxin and related proteins [Yersinia frederiksenii AT...	7.0E-28	[1..82]	[1..82]
gi\|84323787, gi\|... - gi\|84323787\|ref\|ZP_00971854.1\| COG0695: Glutaredoxin and related proteins [Pseudomonas aeruginosa 21...	1.0E-27	[1..82]	[1..82]
gi\|150962158, gi... - gi\|94417603\|ref\|ZP_01297420.1\| hypothetical protein PaerP_01000380 [Pseudomonas aeruginosa PA7], gi\|...	1.0E-27	[1..82]	[1..82]
gi\|49082466 - gi\|49082466\|gb\|AAT50633.1\| PA5129 [synthetic construct]	1.0E-27	[1..82]	[1..82]
GLRX_PSEAE - Glutaredoxin OS=Pseudomonas aeruginosa GN=grx PE=3 SV=1 gi\|218774456, gi... - gi\|218894228\|ref\|YP_002443097.1\| glutaredoxin [Pseudomonas aeruginosa LESB58], gi\|218774456\|emb\|CAW3... gi\|107104225 - gi\|107104225\|ref\|ZP_01368143.1\| hypothetical protein PaerPA_01005298 [Pseudomonas aeruginosa PACS2] GLRX_PSEAE - Glutaredoxin OS=Pseudomonas aeruginosa (strain ATCC 15692 / PAO1 / 1C / PRS 101 / LMG 12228) GN=grx ... gi\|116053276, gi... - gi\|53726642\|ref\|ZP_00141600.2\| COG0695: Glutaredoxin and related proteins [Pseudomonas aeruginosa UC...	1.0E-27	[1..82]	[1..82]
gi\|238717336, gi... - gi\|77961960\|ref\|ZP_00825787.1\| COG0695: Glutaredoxin and related proteins [Yersinia mollaretii ATCC ...	1.0E-27	[1..82]	[1..82]
gi\|84667611, gi\|... - gi\|84684632\|ref\|ZP_01012533.1\| glutaredoxin [Rhodobacterales bacterium HTCC2654], gi\|84667611\|gb\|EAQ...	4.0E-27	[1..82]	[1..82]
gi\|85060164, gi\|... - gi\|85060164\|ref\|YP_455866.1\| glutaredoxin 3 [Sodalis glossinidius str. 'morsitans'], gi\|84780684\|dbj...	4.0E-27	[1..82]	[1..82]

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Predicted Domain #1

Region A:
Residues: [1-82]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAKIEMYTKA TCPFCHRAKA LLNAKGAAFH EIAIDNDPAK REEMIARSGR TTVPQIFIDG  60
   61 QHIGGCDDLH ALDARGGLDP LL

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	27.0
Match:	1fovA
Description:	Glutaredoxin (Grx, thioltransferase)
Matching Structure (courtesy of the PDB):

Predicted functions:

Term	Confidence	Notes
catalytic activity	0.142133664747919	bayes_pls_golite062009

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: