YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|165939882, gi...
Organism:	Yersinia pestis biovar Orientalis str. IP275
Length:	337 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

[What does the above image mean?]

[Show Ginzu Version Information]

Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|165939882, gi....

Description	E-value	Query Range	Subject Range
gi\|59712856, gi\|... - gi\|59712856\|ref\|YP_205632.1\| peptidase [Vibrio fischeri ES114], gi\|59480957\|gb\|AAW86744.1\| predicted...	0.0	[1..337]	[1..337]
TSAD_HISS2 - tRNA N6-adenosine threonylcarbamoyltransferase OS=Histophilus somni (strain 2336) GN=tsaD PE=3 SV=1	3.0E-99	[1..337]	[1..342]
tr\|D7HDL9\|D7HDL9... - tRNA N6-adenosine threonylcarbamoyltransferase OS=Vibrio cholerae GN=tsaD PE=3 SV=1, tRNA N6-adenosi... gi\|229332108, gi... - gi\|229530335\|ref\|ZP_04419723.1\| endopeptidase [Vibrio cholerae 12129(1)], gi\|229332108\|gb\|EEN97596.1... gi\|150419451, gi... - gi\|75823731\|ref\|ZP_00753215.1\| COG0533: Metal-dependent proteases with possible chaperone activity [... gi\|153214950, gi... - gi\|153214950\|ref\|ZP_01949733.1\| O-sialoglycoprotein endopeptidase [Vibrio cholerae 1587], gi\|1241150...	3.0E-99	[1..337]	[1..337]
TSAD_PHOPR - tRNA N6-adenosine threonylcarbamoyltransferase OS=Photobacterium profundum (strain SS9) GN=tsaD PE=3... TSAD_PHOPR, GCP_... - tRNA N6-adenosine threonylcarbamoyltransferase OS=Photobacterium profundum GN=tsaD PE=3 SV=1, Probab...	3.0E-99	[1..337]	[1..337]
gi\|75815669 - gi\|75815669\|ref\|ZP_00746166.1\| COG0533: Metal-dependent proteases with possible chaperone activity [...	4.0E-99	[1..337]	[2..338]
gi\|75818281, gi\|... - gi\|75818281\|ref\|ZP_00748466.1\| COG0533: Metal-dependent proteases with possible chaperone activity [...	5.0E-99	[1..337]	[1..337]
TSAD_ACTP2 - tRNA N6-adenosine threonylcarbamoyltransferase OS=Actinobacillus pleuropneumoniae serotype 5b (strai... gi\|32035197 - gi\|32035197\|ref\|ZP_00135231.1\| COG0533: Metal-dependent proteases with possible chaperone activity [... TSAD_ACTPJ - tRNA N6-adenosine threonylcarbamoyltransferase OS=Actinobacillus pleuropneumoniae serotype 3 (strain... TSAD_ACTP7 - tRNA N6-adenosine threonylcarbamoyltransferase OS=Actinobacillus pleuropneumoniae serotype 7 (strain...	5.0E-99	[1..337]	[1..342]
gi\|23466489, gi\|... - gi\|23466489\|ref\|ZP_00122077.1\| COG0533: Metal-dependent proteases with possible chaperone activity [...	5.0E-99	[1..337]	[1..342]
gi\|121590699, gi... - gi\|121590699\|ref\|ZP_01678032.1\| O-sialoglycoprotein endopeptidase [Vibrio cholerae 2740-80], gi\|1215... gi\|124117986, gi... - gi\|153223809\|ref\|ZP_01954064.1\| O-sialoglycoprotein endopeptidase [Vibrio cholerae MAK 757], gi\|1241... gi\|121629166, gi... - gi\|121728554\|ref\|ZP_01681576.1\| O-sialoglycoprotein endopeptidase [Vibrio cholerae V52], gi\|12162916... TSAD_VIBC3 - tRNA N6-adenosine threonylcarbamoyltransferase OS=Vibrio cholerae serotype O1 (strain ATCC 39541 / C... gi\|229509005, gi... - gi\|229509005\|ref\|ZP_04398493.1\| endopeptidase [Vibrio cholerae B33], gi\|229353930\|gb\|EEO18864.1\| end... gi\|153819118, gi... - gi\|153819118\|ref\|ZP_01971785.1\| O-sialoglycoprotein endopeptidase [Vibrio cholerae NCTC 8457], gi\|12... gi\|229355877, gi... - gi\|229507132\|ref\|ZP_04396638.1\| endopeptidase [Vibrio cholerae BX 330286], gi\|229355877\|gb\|EEO20797.... TSAD_VIBCM - tRNA N6-adenosine threonylcarbamoyltransferase OS=Vibrio cholerae serotype O1 (strain M66-2) GN=tsaD... gi\|229606189, gi... - gi\|229606189\|ref\|YP_002876837.1\| endopeptidase [Vibrio cholerae MJ-1236], gi\|229368844\|gb\|ACQ59267.1... tr\|C6YK27\|C6YK27... - tRNA N6-adenosine threonylcarbamoyltransferase OS=Vibrio cholerae MO10 GN=tsaD PE=3 SV=1 gi\|229519673, gi... - gi\|229519673\|ref\|ZP_04409116.1\| endopeptidase [Vibrio cholerae RC9], gi\|229344362\|gb\|EEO09337.1\| end... gi\|254850761, gi... - gi\|254850761\|ref\|ZP_05240111.1\| O-sialoglycoprotein endopeptidase [Vibrio cholerae MO10], gi\|2548464...	6.0E-99	[1..337]	[1..337]
gi\|15603103, gi\|... - gi\|15603103\|ref\|NP_246175.1\| O-sialoglycoprotein endopeptidase [Pasteurella multocida subsp. multoci...	7.0E-99	[1..337]	[1..342]

Back

Predicted Domain #1

Region A:
Residues: [1-337]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MRVLGIETSC DETGIAVYDD KAGLLANQLY SQVKLHADYG GVVPELASRD HVRKTVPLIQ  60
   61 AALKEANLSA KDIDAVAYTA GPGLVGALLV GATIGRALAF AWGVPAVPVH HMEGHLLAPM 120
  121 LEENAPEFPF VALLVSGGHT QLISVTGIGE YLLLGESVDD AAGEAFDKTA KLLGLDYPGG 180
  181 PMLSRMAQQG TVGRFTFPRP MTDRPGLDFS FSGLKTFAAN TIRANGDDDQ TRADIARAFE 240
  241 DAVVDTLAIK SKRALDQTGF KRLVIAGGVS ANQTLRLKLA DMMQKRGGEV FYARPEFCTD 300
  301 NGAMIAYAGM VRLRSNLNSE LSVSVRPRWP LSELPKV

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	72.0
Match:	2ivnA
Description:	No description for 2ivnA was found.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits