YRC Public Data Repository - Protein Structure Prediction

Protein:	BAMA_YERPA
Organism:	Yersinia pestis Antiqua
Length:	795 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for BAMA_YERPA.

Description	E-value	Query Range	Subject Range
gi\|77957697, gi\|... - gi\|77957697\|ref\|ZP_00821746.1\| COG4775: Outer membrane protein/protective antigen OMA87 [Yersinia be...	0.0	[1..795]	[1..794]
gi\|77977740, gi\|... - gi\|77977740\|ref\|ZP_00833181.1\| COG4775: Outer membrane protein/protective antigen OMA87 [Yersinia in...	0.0	[1..795]	[1..794]
gi\|238796617, gi... - gi\|77963167\|ref\|ZP_00826979.1\| COG4775: Outer membrane protein/protective antigen OMA87 [Yersinia mo...	0.0	[1..795]	[1..794]
gi\|77972718, gi\|... - gi\|77972718\|ref\|ZP_00828277.1\| COG4775: Outer membrane protein/protective antigen OMA87 [Yersinia fr...	0.0	[1..795]	[1..795]
YAET_PHOLL - Outer membrane protein assembly factor yaeT OS=Photorhabdus luminescens subsp. laumondii GN=yaeT PE=... BAMA_PHOLL - Outer membrane protein assembly factor BamA OS=Photorhabdus luminescens subsp. laumondii (strain DSM...	0.0	[1..795]	[1..797]
BAMA_PHOLU - Outer membrane protein assembly factor BamA OS=Photorhabdus luminescens GN=bamA PE=3 SV=1	0.0	[1..795]	[1..797]
gi\|205331366, gi... - gi\|205331366\|gb\|EDZ18130.1\| outer membrane protein assembly complex, YaeT protein [Salmonella enteri... gi\|168263908, gi... - gi\|205347521\|gb\|EDZ34152.1\| outer membrane protein assembly complex, YaeT protein [Salmonella enteri... lcl\|NC_016856.1_... - [gene=yaeT] [protein=outer membrane protein assembly factor YaeT] [protein_id=YP_005235896.1] [locat... BAMA_SALTY - Outer membrane protein assembly factor BamA OS=Salmonella typhimurium (strain LT2 / SGSC1412 / ATCC ... YAET_SALTY - Outer membrane protein assembly factor yaeT OS=Salmonella typhimurium GN=yaeT PE=3 SV=1 gi\|197265202, gi... - gi\|197265202\|ref\|ZP_03165276.1\| outer membrane protein assembly complex, YaeT protein [Salmonella en... YAET_SALTY - Outer membrane protein assembly factor yaeT OS=Salmonella typhimurium GN=yaeT PE=3 SV=1	0.0	[1..795]	[1..804]
gi\|254791310, gi... - gi\|254791310\|ref\|YP_003076147.1\| hypothetical protein ECSP_0176 [Escherichia coli O157:H7 str. TW143... gi\|253972197, gi... - gi\|254160296\|ref\|YP_003043404.1\| hypothetical protein ECB_00175 [Escherichia coli B str. REL606], gi... gi\|226840702, gi... - gi\|254037596\|ref\|ZP_04871673.1\| outer membrane protein assembly factor yaeT [Escherichia sp. 1_1_43]... gi\|253976406, gi... - gi\|254287099\|ref\|YP_003052847.1\| hypothetical protein ECD_00175 [Escherichia coli BL21(DE3)], gi\|253... gi\|251783735, gi... - gi\|251783735\|ref\|YP_002998039.1\| hypothetical protein B21_00174 [Escherichia coli BL21], gi\|24237600... BAMA_ECOBW - Outer membrane protein assembly factor BamA OS=Escherichia coli (strain K12 / MC4100 / BW2952) GN=ba... gi\|226902248, gi... - gi\|237704336\|ref\|ZP_04534817.1\| outer membrane protein assembly factor yaeT [Escherichia sp. 3_2_53F... gi\|227884910, gi... - gi\|227884910\|ref\|ZP_04002715.1\| outer membrane protein assembly factor YaeT [Escherichia coli 83972]... gi\|192959168, gi... - gi\|75238880\|ref\|ZP_00722862.1\| COG4775: Outer membrane protein/protective antigen OMA87 [Escherichia... gi\|191172808, gi... - gi\|75240234\|ref\|ZP_00724181.1\| COG4775: Outer membrane protein/protective antigen OMA87 [Escherichia... BAMA_ECO24 - Outer membrane protein assembly factor BamA OS=Escherichia coli O139:H28 (strain E24377A / ETEC) GN=... BAMA_ECOHS - Outer membrane protein assembly factor BamA OS=Escherichia coli O9:H4 (strain HS) GN=bamA PE=3 SV=1 gi\|124499755, gi... - gi\|124529599\|ref\|ZP_01700543.1\| surface antigen (D15) [Escherichia coli B], gi\|124499755\|gb\|EAY47238... BAMA_SHIBS - Outer membrane protein assembly factor BamA OS=Shigella boydii serotype 4 (strain Sb227) GN=bamA PE=... gi\|85674369, gi\|... - gi\|89107057\|ref\|AP_000837.1\| hypothetical protein [Escherichia coli str. K-12 substr. W3110], gi\|856... gi\|193063191, gi... - gi\|75258832\|ref\|ZP_00730222.1\| COG4775: Outer membrane protein/protective antigen OMA87 [Escherichia... gi\|188495809, gi... - gi\|75512189\|ref\|ZP_00734761.1\| COG4775: Outer membrane protein/protective antigen OMA87 [Escherichia... YAET_ECOL6 - Outer membrane protein assembly factor yaeT OS=Escherichia coli O6 GN=yaeT PE=3 SV=1 BAMA_SHIB3 - Outer membrane protein assembly factor BamA OS=Shigella boydii serotype 18 (strain CDC 3083-94 / BS5... BAMA_SHISS - Outer membrane protein assembly factor BamA OS=Shigella sonnei (strain Ss046) GN=bamA PE=3 SV=1 BAMA_ECOLC - Outer membrane protein assembly factor BamA OS=Escherichia coli (strain ATCC 8739 / DSM 1576 / Crook... sp\|B7UIM2\|YAET_ECO27 - Outer membrane protein assembly factor yaeT OS=Escherichia coli O127:H6 (strain E2348/69 / EPEC) GN=... EG12676 - BamABCDE complex OM biogenesis outer membrane pore-forming assembly factor / Outer membrane protein ... BAMA_SHIFL - Outer membrane protein assembly factor BamA OS=Shigella flexneri GN=bamA PE=2 SV=1 BAMA_ECOL6 - Outer membrane protein assembly factor BamA OS=Escherichia coli O6:H1 (strain CFT073 / ATCC 700928 /... gi\|24111612, gi\|... - gi\|24111612\|ref\|NP_706122.1\| outer membrane protein assembly factor YaeT [Shigella flexneri 2a str. ... BAMA_ECO57 - Outer membrane protein assembly factor BamA OS=Escherichia coli O157:H7 GN=bamA PE=3 SV=1 gi\|30039976, gi\|... - gi\|30061734\|ref\|NP_835905.1\| outer membrane protein assembly factor YaeT [Shigella flexneri 2a str. ... gi\|12512902, gi\|... - gi\|15799859\|ref\|NP_285871.1\| outer membrane protein assembly factor YaeT [Escherichia coli O157:H7 E... EG12676 - BamABCDE complex OM biogenesis outer membrane pore-forming assembly factor / Outer membrane protein ... BAMA_SHIF8 - Outer membrane protein assembly factor BamA OS=Shigella flexneri serotype 5b (strain 8401) GN=bamA P... BAMA_ECOUT - Outer membrane protein assembly factor BamA OS=Escherichia coli (strain UTI89 / UPEC) GN=bamA PE=3 S... gi\|189357088, gi... - gi\|189357088\|gb\|EDU75507.1\| outer membrane protein assembly complex, YaeT protein [Escherichia coli ... gi\|13359635, gi\|... - gi\|15829433\|ref\|NP_308206.1\| outer membrane protein assembly factor YaeT [Escherichia coli O157:H7 s... gi\|189360697, gi... - gi\|189360697\|gb\|EDU79116.1\| outer membrane protein assembly complex, YaeT protein [Escherichia coli ... BAMA_ECOL5 - Outer membrane protein assembly factor BamA OS=Escherichia coli O6:K15:H31 (strain 536 / UPEC) GN=ba... gi\|189000478, gi... - gi\|189000478\|gb\|EDU69464.1\| outer membrane protein assembly complex, YaeT protein [Escherichia coli ... YAET_ECOLI, UP05... - Outer membrane protein assembly factor yaeT precursor (Omp85) - Escherichia coli, (P39170) Unknown p... BAMA_ECO8A - Outer membrane protein assembly factor BamA OS=Escherichia coli O8 (strain IAI1) GN=bamA PE=3 SV=1 BAMA_ECO45 - Outer membrane protein assembly factor BamA OS=Escherichia coli O45:K1 (strain S88 / ExPEC) GN=bamA ... BAMA_ECO55 - Outer membrane protein assembly factor BamA OS=Escherichia coli (strain 55989 / EAEC) GN=bamA PE=3 S... BAMA_ECO7I - Outer membrane protein assembly factor BamA OS=Escherichia coli O7:K1 (strain IAI39 / ExPEC) GN=bamA... BAMA_ECOLU - Outer membrane protein assembly factor BamA OS=Escherichia coli O17:K52:H18 (strain UMN026 / ExPEC) ... gi\|168789286, gi... - gi\|189371106\|gb\|EDU89522.1\| outer membrane protein assembly complex, YaeT protein [Escherichia coli ... BAMA_ECODH - Outer membrane protein assembly factor BamA OS=Escherichia coli (strain K12 / DH10B) GN=bamA PE=3 SV... gi\|208728121, gi... - gi\|208808320\|ref\|ZP_03250657.1\| outer membrane protein assembly complex, YaeT protein [Escherichia c... gi\|208734522, gi... - gi\|208813245\|ref\|ZP_03254574.1\| outer membrane protein assembly complex, YaeT protein [Escherichia c... BAMA_ECO5E - Outer membrane protein assembly factor BamA OS=Escherichia coli O157:H7 (strain EC4115 / EHEC) GN=ba... BAMA_ECOSE - Outer membrane protein assembly factor BamA OS=Escherichia coli (strain SE11) GN=bamA PE=3 SV=1 BAMA_ECO27 - Outer membrane protein assembly factor BamA OS=Escherichia coli O127:H6 (strain E2348/69 / EPEC) GN=... gi\|217320784, gi... - gi\|217324563\|ref\|ZP_03440647.1\| outer membrane protein assembly complex, YaeT protein [Escherichia c...	0.0	[1..795]	[1..810]
gi\|75210500, gi\|... - gi\|75210500\|ref\|ZP_00710651.1\| COG4775: Outer membrane protein/protective antigen OMA87 [Escherichia...	0.0	[1..795]	[1..810]
BAMA_SHIDS - Outer membrane protein assembly factor BamA OS=Shigella dysenteriae serotype 1 (strain Sd197) GN=bam...	0.0	[1..795]	[1..810]

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Predicted Domain #1

Region A:
Residues: [1-210]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAMKKLLIAS LLFGSATVYG ADGFVVNDIH FEGLQRVAVG AALLNMPVRV GDTVSDDDIG  60
   61 KTIRALFATG NFEDVRVLRD GNTLIVQVKE RPTIASITFS GNKAVKEDML KQNLEASGVR 120
  121 VGEALDRTTI SNIEKGLEDF YYSVGKYSAS VKAVVTPLPR NRVDLKLVFT EGVSAKIQQI 180
  181 NIVGNHSFTT DELISRFQLR DEVPWWNVVG

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	82.39794
Match:	2qczA
Description:	No description for 2qczA was found.

Predicted Domain #2

Region A:
Residues: [211-795]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 DRKYQKQKLA GDLETLRSFY LDRGYARFNI DSTQVSLTPD KKGIYVTINI TEGPQFKLNS  60
   61 VIVSGNLAGH QSEAEKLTKI EPGELFNGSK VTRMEDDIKK MLGRYGYAYP RVVTQPEIND 120
  121 DDKTVKLHIN VDAGNRFYVR HIRFEGNDTS KDSVLRREMR QMEGAWLGND QVEAGKERLN 180
  181 RLGYFETVDV ETQRVPGAAD LVDVTYKVKE RNTGSLNFGI GYGTESGVSF QVGVQQDNWL 240
  241 GTGNTVGING TKNDYQTYAE FTLMDPYFTV DGVSLGGRIF YNDFKADNAD LSGYTNSSYG 300
  301 ADGTLGFPIN ENNSLRVGVG YVHNDLSDML PQVAMWRYLE SVGERPGYDG REGFTTDDFT 360
  361 LNLGWTYNNL DRGFFPTSGV KSSVNTKITV PGSDNEFYKV TFDTSAYQPL NEDRSWVLLG 420
  421 RGRLGYGDGI GSKEMPFYEN FYAGGSSTVR GFRSNNIGPK AAYYANGGAT VTNSTDAVGG 480
  481 NAMAVASIEL ITPTPFISEK YSNSVRTSIF IDSGTVWDTN WENTAKTRAA GIPDYGKASN 540
  541 IRVSAGVALQ WMSPLGPLVF SYAKPVKDYE GDKSEQFQFN IGKTW

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	41.0
Match:	2qdzA
Description:	No description for 2qdzA was found.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits