YRC Public Data Repository - Protein Structure Prediction

Protein:	CHBG_YERPN
Organism:	Yersinia pestis Nepal516
Length:	253 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for CHBG_YERPN.

Description	E-value	Query Range	Subject Range
gi\|238793824, gi... - gi\|77978442\|ref\|ZP_00833871.1\| COG3394: Uncharacterized protein conserved in bacteria [Yersinia inte...	4.0E-98	[1..253]	[1..253]
gi\|77973076, gi\|... - gi\|77973076\|ref\|ZP_00828628.1\| COG3394: Uncharacterized protein conserved in bacteria [Yersinia fred...	2.0E-97	[1..253]	[1..253]
gi\|193068929, gi... - gi\|75236798\|ref\|ZP_00720869.1\| COG3394: Uncharacterized protein conserved in bacteria [Escherichia c...	9.0E-96	[1..252]	[1..251]
CHBG_SHIFL - Chitooligosaccharide deacetylase OS=Shigella flexneri GN=chbG PE=3 SV=1 gi\|24051810, gi\|... - gi\|24112869\|ref\|NP_707379.1\| hypothetical protein SF1495 [Shigella flexneri 2a str. 301], gi\|2405181... gi\|30063000, gi\|... - gi\|30063000\|ref\|NP_837171.1\| hypothetical protein S1612 [Shigella flexneri 2a str. 2457T], gi\|300412... CHBG_SHIF8 - Chitooligosaccharide deacetylase OS=Shigella flexneri serotype 5b (strain 8401) GN=chbG PE=3 SV=1	4.0E-95	[1..252]	[1..251]
CHBG_SHISS - Chitooligosaccharide deacetylase OS=Shigella sonnei (strain Ss046) GN=chbG PE=3 SV=1	5.0E-95	[1..252]	[1..251]
CHBG_ECOL6 - Chitooligosaccharide deacetylase OS=Escherichia coli O6:H1 (strain CFT073 / ATCC 700928 / UPEC) GN=c... gi\|227885844, gi... - gi\|227885844\|ref\|ZP_04003649.1\| YdjC protein [Escherichia coli 83972], gi\|227837417\|gb\|EEJ47883.1\| Y... CHBG_ECOL6 - UPF0249 protein ChbG OS=Escherichia coli O6 GN=chbG PE=3 SV=1	1.0E-94	[1..252]	[1..251]
CHBG_ECO45 - Chitooligosaccharide deacetylase OS=Escherichia coli O45:K1 (strain S88 / ExPEC) GN=chbG PE=3 SV=1 CHBG_ECOK1 - Chitooligosaccharide deacetylase OS=Escherichia coli O1:K1 / APEC GN=chbG PE=3 SV=1 CHBG_ECO81 - Chitooligosaccharide deacetylase OS=Escherichia coli O81 (strain ED1a) GN=chbG PE=3 SV=1 CHBG_ECOUT - Chitooligosaccharide deacetylase OS=Escherichia coli (strain UTI89 / UPEC) GN=chbG PE=3 SV=1	1.0E-94	[1..252]	[1..251]
EG12198 - chito-oligosaccharide deacetylase / Chito-oligosaccharide deacetylase CHBG_ECODH - Chitooligosaccharide deacetylase OS=Escherichia coli (strain K12 / DH10B) GN=chbG PE=3 SV=1 EG12198 - chito-oligosaccharide deacetylase / Chito-oligosaccharide deacetylase CHBG_ECOBW - Chitooligosaccharide deacetylase OS=Escherichia coli (strain K12 / MC4100 / BW2952) GN=chbG PE=3 SV=... CHBG_ECOLI - UPF0249 protein chbG - Escherichia coli gi\|1742830, gi\|8... - gi\|89108572\|ref\|AP_002352.1\| hypothetical protein [Escherichia coli str. K-12 substr. W3110], gi\|174... gi\|194438500, gi... - gi\|83586032\|ref\|ZP_00924670.1\| COG3394: Uncharacterized protein conserved in bacteria [Escherichia c...	1.0E-94	[1..252]	[1..248]
gi\|75256135, gi\|... - gi\|75256135\|ref\|ZP_00727831.1\| COG3394: Uncharacterized protein conserved in bacteria [Escherichia c... gi\|191169018, gi... - gi\|75227706\|ref\|ZP_00714441.1\| COG3394: Uncharacterized protein conserved in bacteria [Escherichia c... gi\|194413422, gi... - gi\|75210220\|ref\|ZP_00710388.1\| COG3394: Uncharacterized protein conserved in bacteria [Escherichia c... CHBG_ECO24 - Chitooligosaccharide deacetylase OS=Escherichia coli O139:H28 (strain E24377A / ETEC) GN=chbG PE=3 S...	1.0E-94	[1..250]	[1..249]
gi\|238796690, gi... - gi\|77961649\|ref\|ZP_00825482.1\| COG3394: Uncharacterized protein conserved in bacteria [Yersinia moll...	2.0E-94	[1..253]	[1..253]

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Predicted Domain #1

Region A:
Residues: [1-253]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MEKLLIVNAD DFGLCKGQNY GIIDAFRNGV VSSTTAMMNS VDINHAAELS AQYPALPVGM  60
   61 HFVLTFGRPL TAMPSLTDAN GELGKWLWQR AGAGTLDLNE IAQELECQFE RFSAVFGRPP 120
  121 THIDSHHHVH MLPQIYPLVA AFAREKSLPL RIDRHEVQQH GLTLDNPRSS EWFNAGFYGE 180
  181 NLSEPSFLQL LEHADQQGVN SLEIMCHPAF IDQTLMTSGY CYPRLTELAI LTSPTLKPAI 240
  241 AQRGYRLGSF LDC

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	71.221849
Match:	2i5iA
Description:	No description for 2i5iA was found.

Predicted functions:

Term	Confidence	Notes
catalytic activity	0.412391974836	bayes_pls_golite062009
hydrolase activity	0.333866445066122	bayes_pls_golite062009

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: