YRC Public Data Repository - Protein Structure Prediction

Protein:	RECO_YERPA
Organism:	Yersinia pestis Antiqua
Length:	241 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for RECO_YERPA.

Description	E-value	Query Range	Subject Range
gi\|22125199, gi\|... - gi\|22125199\|ref\|NP_668622.1\| DNA repair protein RecO [Yersinia pestis KIM], gi\|21958064\|gb\|AAM84873.... gi\|45442306, gi\|... - gi\|45442306\|ref\|NP_993845.1\| DNA repair protein RecO [Yersinia pestis biovar Microtus str. 91001], g...	5.0E-69	[1..241]	[3..243]
gi\|238726835, gi... - gi\|77978406\|ref\|ZP_00833835.1\| COG1381: Recombinational DNA repair protein (RecF pathway) [Yersinia ...	4.0E-68	[1..241]	[1..241]
RECO_ECOLU - DNA repair protein RecO OS=Escherichia coli O17:K52:H18 (strain UMN026 / ExPEC) GN=recO PE=3 SV=1 RECO_ECOSM - DNA repair protein RecO OS=Escherichia coli (strain SMS-3-5 / SECEC) GN=recO PE=3 SV=1 RECO_ECOSE - DNA repair protein RecO OS=Escherichia coli (strain SE11) GN=recO PE=3 SV=1 gi\|218696193, gi... - gi\|218696193\|ref\|YP_002403860.1\| DNA repair protein RecO [Escherichia coli 55989], gi\|218352925\|emb\|... RECO_ECO7I - DNA repair protein RecO OS=Escherichia coli O7:K1 (strain IAI39 / ExPEC) GN=recO PE=3 SV=1 RECO_ESCF3 - DNA repair protein RecO OS=Escherichia fergusonii (strain ATCC 35469 / DSM 13698 / CDC 0568-73) GN=r... RECO_ECO8A - DNA repair protein RecO OS=Escherichia coli O8 (strain IAI1) GN=recO PE=3 SV=1 gi\|194429295, gi... - gi\|75209489\|ref\|ZP_00709714.1\| COG1381: Recombinational DNA repair protein (RecF pathway) [Escherich... RECO_ECOHS - DNA repair protein RecO OS=Escherichia coli O9:H4 (strain HS) GN=recO PE=3 SV=1 RECO_ECO24 - DNA repair protein RecO OS=Escherichia coli O139:H28 (strain E24377A / ETEC) GN=recO PE=3 SV=1 gi\|83570801, gi\|... - gi\|83570801\|ref\|ZP_00922244.1\| COG1381: Recombinational DNA repair protein (RecF pathway) [Shigella ... RECO_SHISS - DNA repair protein RecO OS=Shigella sonnei (strain Ss046) GN=recO PE=3 SV=1 gi\|75257989, gi\|... - gi\|75257989\|ref\|ZP_00729463.1\| COG1381: Recombinational DNA repair protein (RecF pathway) [Escherich... gi\|75237689, gi\|... - gi\|75237689\|ref\|ZP_00721705.1\| COG1381: Recombinational DNA repair protein (RecF pathway) [Escherich... gi\|75228860, gi\|... - gi\|75228860\|ref\|ZP_00715461.1\| COG1381: Recombinational DNA repair protein (RecF pathway) [Escherich...	1.0E-67	[1..239]	[1..239]
RECO_SHIF8 - DNA repair protein RecO OS=Shigella flexneri serotype 5b (strain 8401) GN=recO PE=3 SV=1	1.0E-67	[1..239]	[1..239]
RECO_SHIFL - DNA repair protein RecO OS=Shigella flexneri GN=recO PE=3 SV=1 gi\|24053008, gi\|... - gi\|24113907\|ref\|NP_708417.1\| DNA repair protein RecO [Shigella flexneri 2a str. 301], gi\|24053008\|gb... gi\|30042223, gi\|... - gi\|30063967\|ref\|NP_838138.1\| DNA repair protein RecO [Shigella flexneri 2a str. 2457T], gi\|30042223\|...	2.0E-67	[1..239]	[1..239]
RECO_ECOL6 - DNA repair protein recO OS=Escherichia coli O6 GN=recO PE=3 SV=1 gi\|85675456, gi\|... - gi\|89109371\|ref\|AP_003151.1\| gap repair protein [Escherichia coli str. K-12 substr. W3110], gi\|85675... gi\|195936712 - gi\|195936712\|ref\|ZP_03082094.1\| DNA repair protein RecO [Escherichia coli O157:H7 str. EC4024] RECO_SHIDS - DNA repair protein RecO OS=Shigella dysenteriae serotype 1 (strain Sd197) GN=recO PE=3 SV=1 gi\|208808195, gi... - gi\|208808195\|ref\|ZP_03250532.1\| DNA repair protein RecO [Escherichia coli O157:H7 str. EC4206], gi\|2... gi\|188487417, gi... - gi\|75513175\|ref\|ZP_00735617.1\| COG1381: Recombinational DNA repair protein (RecF pathway) [Escherich... gi\|208813327, gi... - gi\|208813327\|ref\|ZP_03254656.1\| DNA repair protein RecO [Escherichia coli O157:H7 str. EC4045], gi\|2... gi\|75237416, gi\|... - gi\|75237416\|ref\|ZP_00721451.1\| COG1381: Recombinational DNA repair protein (RecF pathway) [Escherich... RECO_ECOK1 - DNA repair protein RecO OS=Escherichia coli O1:K1 / APEC GN=recO PE=3 SV=1 gi\|208821700, gi... - gi\|208821700\|ref\|ZP_03262020.1\| DNA repair protein RecO [Escherichia coli O157:H7 str. EC4042], gi\|2... RECO_ECOL6 - DNA repair protein RecO OS=Escherichia coli O6:H1 (strain CFT073 / ATCC 700928 / UPEC) GN=recO PE=3 ... gi\|124499853, gi... - gi\|124529546\|ref\|ZP_01700516.1\| DNA repair protein RecO [Escherichia coli B], gi\|124499853\|gb\|EAY473... RECO_ECO5E - DNA repair protein RecO OS=Escherichia coli O157:H7 (strain EC4115 / EHEC) GN=recO PE=3 SV=1 RECO_ECO57 - DNA repair protein RecO OS=Escherichia coli O157:H7 GN=recO PE=3 SV=1 gi\|217327334, gi... - gi\|217327334\|ref\|ZP_03443417.1\| DNA repair protein RecO [Escherichia coli O157:H7 str. TW14588], gi\|... EG10832 - gap repair protein / Conjugational recombination and repair; DNA-binding protein; RecA-like strand a... RECO_ECO45 - DNA repair protein RecO OS=Escherichia coli O45:K1 (strain S88 / ExPEC) GN=recO PE=3 SV=1 gi\|15803091, gi\|... - gi\|15803091\|ref\|NP_289122.1\| DNA repair protein RecO [Escherichia coli O157:H7 EDL933], gi\|12516982\|... gi\|218690681, gi... - gi\|218690681\|ref\|YP_002398893.1\| DNA repair protein RecO [Escherichia coli ED1a], gi\|218428245\|emb\|C... gi\|194423431, gi... - gi\|83586783\|ref\|ZP_00925414.1\| COG1381: Recombinational DNA repair protein (RecF pathway) [Escherich... RECO_ECOUT - DNA repair protein RecO OS=Escherichia coli (strain UTI89 / UPEC) GN=recO PE=3 SV=1 gi\|13362902, gi\|... - gi\|15832685\|ref\|NP_311458.1\| DNA repair protein RecO [Escherichia coli O157:H7 str. Sakai], gi\|13362... RECO_ECOL5 - DNA repair protein RecO OS=Escherichia coli O6:K15:H31 (strain 536 / UPEC) GN=recO PE=3 SV=1 RECO_ECOLC - DNA repair protein RecO OS=Escherichia coli (strain ATCC 8739 / DSM 1576 / Crooks) GN=recO PE=3 SV=1 gi\|168757774, gi... - gi\|189355304\|gb\|EDU73723.1\| DNA repair protein RecO [Escherichia coli O157:H7 str. EC4401], gi\|16875... gi\|189368475, gi... - gi\|189368475\|gb\|EDU86891.1\| DNA repair protein RecO [Escherichia coli O157:H7 str. EC4501], gi\|16876... gi\|254593915, gi... - gi\|254794515\|ref\|YP_003079352.1\| gap repair protein [Escherichia coli O157:H7 str. TW14359], gi\|2545... gi\|189362323, gi... - gi\|189362323\|gb\|EDU80742.1\| DNA repair protein RecO [Escherichia coli O157:H7 str. EC4486], gi\|16876... gi\|253974441, gi... - gi\|254162540\|ref\|YP_003045648.1\| DNA repair protein RecO [Escherichia coli B str. REL606], gi\|253974... gi\|187770738, gi... - gi\|187770738\|gb\|EDU34582.1\| DNA repair protein RecO [Escherichia coli O157:H7 str. EC4196], gi\|16877... gi\|253772536, gi... - gi\|254289301\|ref\|YP_003055049.1\| DNA repair protein RecO [Escherichia coli BL21(DE3)], gi\|253978608\|... gi\|189003617, gi... - gi\|189003617\|gb\|EDU72603.1\| DNA repair protein RecO [Escherichia coli O157:H7 str. EC4076], gi\|16877... gi\|242378166, gi... - gi\|251785893\|ref\|YP_003000197.1\| hypothetical protein B21_02423 [Escherichia coli BL21], gi\|24237816... gi\|168787925, gi... - gi\|189372382\|gb\|EDU90798.1\| DNA repair protein RecO [Escherichia coli O157:H7 str. EC869], gi\|168787... gi\|238861284, gi... - gi\|238901730\|ref\|YP_002927526.1\| gap repair protein [Escherichia coli BW2952], gi\|238861284\|gb\|ACR63... gi\|189378575, gi... - gi\|189378575\|gb\|EDU96991.1\| DNA repair protein RecO [Escherichia coli O157:H7 str. EC508], gi\|168798... gi\|226901441, gi... - gi\|237705075\|ref\|ZP_04535556.1\| gap repair protein RecO [Escherichia sp. 3_2_53FAA], gi\|226901441\|gb... RECO_ECODH - DNA repair protein RecO OS=Escherichia coli (strain K12 / DH10B) GN=recO PE=3 SV=1 gi\|227835951, gi... - gi\|227887601\|ref\|ZP_04005406.1\| recombination protein O [Escherichia coli 83972], gi\|227835951\|gb\|EE... RECO_ECOLI - DNA repair protein recO (Recombination protein O) - Escherichia coli EG10832 - gap repair protein / Conjugational recombination and repair; DNA-binding protein; RecA-like strand a... gi\|168748365, gi... - gi\|188017100\|gb\|EDU55222.1\| DNA repair protein RecO [Escherichia coli O157:H7 str. EC4113], gi\|16874...	2.0E-67	[1..239]	[1..239]
RECO_SHIB3 - DNA repair protein RecO OS=Shigella boydii serotype 18 (strain CDC 3083-94 / BS512) GN=recO PE=3 SV=... RECO_SHIBS - DNA repair protein RecO OS=Shigella boydii serotype 4 (strain Sb227) GN=recO PE=3 SV=1	5.0E-67	[1..239]	[1..239]
RECO_SALTY - DNA repair protein recO OS=Salmonella typhimurium GN=recO PE=3 SV=1 RECO_SALCH - DNA repair protein recO OS=Salmonella choleraesuis GN=recO PE=3 SV=1 RECO_SALTY - DNA repair protein recO OS=Salmonella typhimurium GN=recO PE=3 SV=1 lcl\|NC_016856.1_... - [gene=recO] [protein=DNA repair protein RecO] [protein_id=YP_005238686.1] [location=complement(27747... gi\|205325288, gi... - gi\|205325288\|gb\|EDZ13127.1\| DNA repair protein RecO [Salmonella enterica subsp. enterica serovar Sai... gi\|167992710, gi... - gi\|205329107\|gb\|EDZ15871.1\| DNA repair protein RecO [Salmonella enterica subsp. enterica serovar 4,[... gi\|205337667, gi... - gi\|205337667\|gb\|EDZ24431.1\| DNA repair protein RecO [Salmonella enterica subsp. enterica serovar Hei... RECO_SALCH - DNA repair protein RecO OS=Salmonella choleraesuis (strain SC-B67) GN=recO PE=3 SV=1 RECO_SALPA - DNA repair protein RecO OS=Salmonella paratyphi A (strain ATCC 9150 / SARB42) GN=recO PE=3 SV=1 RECO_SALPB - DNA repair protein RecO OS=Salmonella paratyphi B (strain ATCC BAA-1250 / SPB7) GN=recO PE=3 SV=1 gi\|213646355 - gi\|213646355\|ref\|ZP_03376408.1\| DNA repair protein RecO [Salmonella enterica subsp. enterica serovar... gi\|213974327 - gi\|213974327\|ref\|ZP_03401586.1\| DNA repair protein RecO [Salmonella enterica subsp. enterica serovar... RECO_SALPB - DNA repair protein recO OS=Salmonella paratyphi B (strain ATCC BAA-1250 / SPB7) GN=recO PE=3 SV=1 gi\|214000668 - gi\|214000668\|ref\|ZP_03411403.1\| DNA repair protein RecO [Salmonella enterica subsp. enterica serovar... gi\|224582879, gi... - gi\|224582879\|ref\|YP_002636677.1\| DNA repair protein RecO [Salmonella enterica subsp. enterica serova... RECO_SALTI - DNA repair protein RecO OS=Salmonella typhi GN=recO PE=3 SV=1 RECO_SALPK - DNA repair protein RecO OS=Salmonella paratyphi A (strain AKU_12601) GN=recO PE=3 SV=1 RECO_SALTY - DNA repair protein RecO OS=Salmonella typhimurium (strain LT2 / SGSC1412 / ATCC 700720) GN=recO PE=3... gi\|204321446, gi... - gi\|204929727\|ref\|ZP_03220801.1\| DNA repair protein RecO [Salmonella enterica subsp. enterica serovar... gi\|213425278 - gi\|213425278\|ref\|ZP_03358028.1\| DNA repair protein RecO [Salmonella enterica subsp. enterica serovar... RECO_SALTI - DNA repair protein recO OS=Salmonella typhi GN=recO PE=3 SV=1 gi\|213583125 - gi\|213583125\|ref\|ZP_03364951.1\| DNA repair protein RecO [Salmonella enterica subsp. enterica serovar... RECO_SALNS - DNA repair protein RecO OS=Salmonella newport (strain SL254) GN=recO PE=3 SV=1 RECO_SALHS - DNA repair protein RecO OS=Salmonella heidelberg (strain SL476) GN=recO PE=3 SV=1 gi\|29136437, gi\|... - gi\|29140812\|ref\|NP_804154.1\| DNA repair protein RecO [Salmonella enterica subsp. enterica serovar Ty... RECO_SALA4 - DNA repair protein RecO OS=Salmonella agona (strain SL483) GN=recO PE=3 SV=1 gi\|16761491 - gi\|16761491\|ref\|NP_457108.1\| DNA repair protein RecO [Salmonella enterica subsp. enterica serovar Ty... gi\|197243788, gi... - gi\|197265533\|ref\|ZP_03165607.1\| DNA repair protein RecO [Salmonella enterica subsp. enterica serovar... RECO_SALPA - DNA repair protein recO OS=Salmonella paratyphi A GN=recO PE=3 SV=1 gi\|238912697 - gi\|238912697\|ref\|ZP_04656534.1\| DNA repair protein RecO [Salmonella enterica subsp. enterica serovar... RECO_SALCH - DNA repair protein recO OS=Salmonella choleraesuis GN=recO PE=3 SV=1	5.0E-67	[1..239]	[1..239]
gi\|238788222, gi... - gi\|77974721\|ref\|ZP_00830260.1\| COG1381: Recombinational DNA repair protein (RecF pathway) [Yersinia ...	6.0E-67	[1..241]	[1..241]
RECO_VIBPA - DNA repair protein RecO OS=Vibrio parahaemolyticus serotype O3:K6 (strain RIMD 2210633) GN=recO PE=3... RECO_VIBPA - DNA repair protein recO OS=Vibrio parahaemolyticus GN=recO PE=3 SV=1	7.0E-67	[2..237]	[7..241]

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Predicted Domain #1

Region A:
Residues: [1-241]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MDGWQRAFVL HGRPYSETSL MLDLFTEGEG RMRVLAKGAR GRRSNLKGCL QPFTPLLVRW  60
   61 SGRGEVKTLR SAEPVSLALP LSGSMLYSGL YVNELLSRVL EHQTSYSALF FDYLHCLQAL 120
  121 AGSDGSPEHA LRQFELAMLA NLGYGVDFLH CAGSGQPVSD TMTYRYREEK GFIASLVVDH 180
  181 YSFTGRQLLA LANREFPDAD TLRAAKRFTR IALKPYLGGK PLKSRELFRQ FVIKPPADPS 240
  241 P

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	25.221849
Match:	1u5kA
Description:	Recombinational repair protein RecO
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits