YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|108779985, gi...
Organism:	Yersinia pestis Antiqua
Length:	220 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|108779985, gi....

Description	E-value	Query Range	Subject Range
gi\|238791911, gi... - gi\|77976968\|ref\|ZP_00832431.1\| COG0586: Uncharacterized membrane-associated protein [Yersinia interm...	2.0E-43	[1..220]	[1..220]
gi\|238718698, gi... - gi\|77960847\|ref\|ZP_00824702.1\| COG0586: Uncharacterized membrane-associated protein [Yersinia mollar...	2.0E-43	[1..220]	[1..220]
gi\|77957381, gi\|... - gi\|77957381\|ref\|ZP_00821439.1\| COG0586: Uncharacterized membrane-associated protein [Yersinia bercov...	4.0E-43	[1..220]	[1..220]
gi\|238788687, gi... - gi\|77975510\|ref\|ZP_00831045.1\| COG0586: Uncharacterized membrane-associated protein [Yersinia freder...	3.0E-42	[1..220]	[1..220]
gi\|37527058, gi\|... - gi\|37527058\|ref\|NP_930402.1\| hypothetical protein plu3172 [Photorhabdus luminescens subsp. laumondii...	5.0E-42	[2..219]	[13..230]
gi\|67547666, gi\|... - gi\|67547666\|ref\|ZP_00425567.1\| DedA [Burkholderia vietnamiensis G4], gi\|67531101\|gb\|EAM27925.1\| DedA...	6.0E-42	[1..217]	[753..970]
gi\|22125495, gi\|... - gi\|22125495\|ref\|NP_668918.1\| hypothetical protein y1600 [Yersinia pestis KIM], gi\|21958391\|gb\|AAM851...	4.0E-41	[1..220]	[10..229]
gi\|197248570, gi... - gi\|197248570\|ref\|YP_002147328.1\| membrane protein, DedA family [Salmonella enterica subsp. enterica ... gi\|197241308, gi... - gi\|197263053\|ref\|ZP_03163127.1\| membrane protein, DedA family [Salmonella enterica subsp. enterica s... gi\|197361670, gi... - gi\|197361670\|ref\|YP_002141306.1\| hypothetical protein SSPA0461 [Salmonella enterica subsp. enterica ... gi\|197940369, gi... - gi\|198245853\|ref\|YP_002216440.1\| membrane protein, DedA family [Salmonella enterica subsp. enterica ... gi\|168465921, gi... - gi\|195631132\|gb\|EDX49692.1\| membrane protein, DedA family [Salmonella enterica subsp. enterica serov... gi\|205344935, gi... - gi\|205344935\|gb\|EDZ31699.1\| membrane protein, DedA family [Salmonella enterica subsp. enterica serov... gi\|194444175, gi... - gi\|194444175\|ref\|YP_002041631.1\| membrane protein, DedA family [Salmonella enterica subsp. enterica ... gi\|194468752, gi... - gi\|194468752\|ref\|ZP_03074736.1\| membrane protein, DedA family [Salmonella enterica subsp. enterica s... gi\|205325277, gi... - gi\|205325277\|gb\|EDZ13116.1\| membrane protein, DedA family [Salmonella enterica subsp. enterica serov... gi\|205328845, gi... - gi\|205328845\|gb\|EDZ15609.1\| membrane protein, DedA family [Salmonella enterica subsp. enterica serov... gi\|205335626, gi... - gi\|205335626\|gb\|EDZ22390.1\| membrane protein, DedA family [Salmonella enterica subsp. enterica serov... gi\|205349458, gi... - gi\|205349458\|gb\|EDZ36089.1\| membrane protein, DedA family [Salmonella enterica subsp. enterica serov... gi\|161612897, gi... - gi\|161612897\|ref\|YP_001586862.1\| hypothetical protein SPAB_00603 [Salmonella enterica subsp. enteric... gi\|213852688 - gi\|213852688\|ref\|ZP_03382220.1\| hypothetical protein SentesT_07396 [Salmonella enterica subsp. enter... gi\|214002039 - gi\|214002039\|ref\|ZP_03412774.1\| hypothetical protein Salmonellentericaenterica_17187 [Salmonella ent... gi\|224467670, gi... - gi\|224583143\|ref\|YP_002636941.1\| DedA protein (dsg-1 protein) [Salmonella enterica subsp. enterica s... gi\|238912354 - gi\|238912354\|ref\|ZP_04656191.1\| hypothetical protein SentesTe_14641 [Salmonella enterica subsp. ente... gi\|213426978 - gi\|213426978\|ref\|ZP_03359728.1\| hypothetical protein SentesTyphi_16005 [Salmonella enterica subsp. e... gi\|213582887 - gi\|213582887\|ref\|ZP_03364713.1\| hypothetical protein SentesTyph_17428 [Salmonella enterica subsp. en... gi\|213622845 - gi\|213622845\|ref\|ZP_03375628.1\| hypothetical protein SentesTyp_37222 [Salmonella enterica subsp. ent... gi\|213646799 - gi\|213646799\|ref\|ZP_03376852.1\| hypothetical protein SentesTy_05485 [Salmonella enterica subsp. ente... gi\|199606375, gi... - gi\|200389277\|ref\|ZP_03215889.1\| membrane protein, DedA family [Salmonella enterica subsp. enterica s... gi\|204929140, gi... - gi\|204929140\|ref\|ZP_03220283.1\| membrane protein, DedA family [Salmonella enterica subsp. enterica s... gi\|62180939, gi\|... - gi\|62180939\|ref\|YP_217356.1\| hypothetical protein SC2369 [Salmonella enterica subsp. enterica serova... gi\|205273261, gi... - gi\|205353480\|ref\|YP_002227281.1\| hypothetical protein SG2397 [Salmonella enterica subsp. enterica se... gi\|56126993, gi\|... - gi\|56412736\|ref\|YP_149811.1\| hypothetical protein SPA0497 [Salmonella enterica subsp. enterica serov... gi\|207857785, gi... - gi\|207857785\|ref\|YP_002244436.1\| hypothetical protein SEN2349 [Salmonella enterica subsp. enterica s... lcl\|NC_016856.1_... - [gene=dedA] [protein=hypothetical protein] [protein_id=YP_005238450.1] [location=complement(2531306.... gi\|29136637, gi\|... - gi\|29141012\|ref\|NP_804354.1\| hypothetical protein t0497 [Salmonella enterica subsp. enterica serovar... gi\|16761292 - gi\|16761292\|ref\|NP_456909.1\| hypothetical protein STY2598 [Salmonella enterica subsp. enterica serov... gi\|16503591, gi\|... - gi\|25299139\|pir\|\|AE0802 DedA protein (dsg-1 protein) [imported] - Salmonella enterica subsp. enteric... gi\|16420910, gi\|... - gi\|16765694\|ref\|NP_461309.1\| hypothetical protein STM2367 [Salmonella typhimurium LT2], gi\|16420910\|...	5.0E-41	[1..218]	[1..218]
gi\|85059596, gi\|... - gi\|85059596\|ref\|YP_455298.1\| hypothetical protein SG1618 [Sodalis glossinidius str. 'morsitans'], gi...	1.0E-40	[1..214]	[1..214]
gi\|50121980, gi\|... - gi\|50121980\|ref\|YP_051147.1\| hypothetical protein ECA3057 [Pectobacterium atrosepticum SCRI1043], gi...	1.0E-40	[1..216]	[1..216]

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Predicted Domain #1

Region A:
Residues: [1-220]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MEFIRFVIDF ILNIDVHLAE LVAQYGIWVY AILFLILFCE TGLVVTPFLP GDSLLFVAGA  60
   61 LASLPSNDLN VHTMVTLMVI AAILGDAINY TIGRIFGEKL FSNPDSKIFR RSYLDKTHQF 120
  121 YEKHGGKAII LARFVPIIRT FAPFVAGMGK MSYRHFAAYN VIGALVWVLL FTYAGYLFGN 180
  181 VPIVQNNLKL LIVIIIVVSI LPGVFEVWRH RRAAVRQKNQ

[Run NCBI BLAST on this sequence.]

Detection Method:	Pfam
Confidence:	5.443697
Match:	PF09335.2
Description:	No description for PF09335.2 was found.

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits