YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|229680653, gi...
Organism:	Yersinia pestis Nepal516
Length:	383 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|229680653, gi....

Description	E-value	Query Range	Subject Range
gi\|16764775, gi\|... - gi\|16764775\|ref\|NP_460390.1\| cyclopropane fatty acyl phospholipid synthase [Salmonella typhimurium L... gi\|29141754, gi\|... - gi\|29141754\|ref\|NP_805096.1\| cyclopropane fatty acyl phospholipid synthase [Salmonella enterica subs... gi\|16502782, gi\|... - pir\|\|AC0696 cyclopropane-fatty-acyl-phospholipid synthase (EC 2.1.1.79) [imported] - Salmonella ente... gi\|19880627 - gi\|19880627\|gb\|AAM00427.1\|AF417203_1 cyclopropane fatty acid synthase [Salmonella enterica subsp. en... gi\|16760486 - gi\|16760486\|ref\|NP_456103.1\| cyclopropane fatty acyl phospholipid synthase [Salmonella enterica subs... gi\|205347612, gi... - gi\|205347612\|gb\|EDZ34243.1\| cyclopropane-fatty-acyl-phospholipid synthase [Salmonella enterica subsp... gi\|205339483, gi... - gi\|205339483\|gb\|EDZ26247.1\| cyclopropane-fatty-acyl-phospholipid synthase [Salmonella enterica subsp... gi\|197290941, gi... - gi\|197290941\|gb\|EDY30294.1\| cyclopropane-fatty-acyl-phospholipid synthase [Salmonella enterica subsp... gi\|205323644, gi... - gi\|205323644\|gb\|EDZ11483.1\| cyclopropane-fatty-acyl-phospholipid synthase [Salmonella enterica subsp... gi\|194736258, gi... - gi\|194736258\|ref\|YP_002114438.1\| cyclopropane-fatty-acyl-phospholipid synthase [Salmonella enterica ... gi\|194457151, gi... - gi\|194470787\|ref\|ZP_03076771.1\| cyclopropane-fatty-acyl-phospholipid synthase [Salmonella enterica s... gi\|194407050, gi... - gi\|194448746\|ref\|YP_002045428.1\| cyclopropane fatty acyl phospholipid synthase [Salmonella enterica ... gi\|195634453, gi... - gi\|195634453\|gb\|EDX52805.1\| cyclopropane-fatty-acyl-phospholipid synthase [Salmonella enterica subsp... gi\|238913172 - gi\|238913172\|ref\|ZP_04657009.1\| cyclopropane fatty acyl phospholipid synthase [Salmonella enterica s... gi\|224584064, gi... - gi\|224584064\|ref\|YP_002637862.1\| cyclopropane fatty acyl phospholipid synthase [Salmonella enterica ... gi\|214001978 - gi\|214001978\|ref\|ZP_03412713.1\| cyclopropane fatty acyl phospholipid synthase [Salmonella enterica s... gi\|213646435 - gi\|213646435\|ref\|ZP_03376488.1\| cyclopropane fatty acyl phospholipid synthase [Salmonella enterica s... gi\|213585077 - gi\|213585077\|ref\|ZP_03366903.1\| cyclopropane fatty acyl phospholipid synthase [Salmonella enterica s... gi\|200390331, gi... - gi\|200390331\|ref\|ZP_03216942.1\| cyclopropane-fatty-acyl-phospholipid synthase [Salmonella enterica s... gi\|198244094, gi... - gi\|198244094\|ref\|YP_002215707.1\| cyclopropane-fatty-acyl-phospholipid synthase [Salmonella enterica ... gi\|197241160, gi... - gi\|197262905\|ref\|ZP_03162979.1\| cyclopropane-fatty-acyl-phospholipid synthase [Salmonella enterica s... gi\|197215466, gi... - gi\|197251763\|ref\|YP_002146618.1\| cyclopropane-fatty-acyl-phospholipid synthase [Salmonella enterica ... gi\|213426010 - gi\|213426010\|ref\|ZP_03358760.1\| cyclopropane fatty acyl phospholipid synthase [Salmonella enterica s... gi\|207857069, gi... - gi\|207857069\|ref\|YP_002243720.1\| cyclopropane fatty acyl phospholipid synthase [Salmonella enterica ... gi\|205272640, gi... - gi\|205352859\|ref\|YP_002226660.1\| cyclopropane fatty acyl phospholipid synthase [Salmonella enterica ... gi\|204322969, gi... - gi\|204927627\|ref\|ZP_03218828.1\| cyclopropane-fatty-acyl-phospholipid synthase [Salmonella enterica s... lcl\|NC_016856.1_... - [gene=cfa] [protein=cyclopropane-fatty-acyl-phospholipid synthase] [protein_id=YP_005237296.1] [loca... gi\|62180016, gi\|... - gi\|62180016\|ref\|YP_216433.1\| cyclopropane fatty acyl phospholipid synthase [Salmonella enterica subs...	2.0E-80	[1..383]	[1..382]
gi\|56413604, gi\|... - gi\|56413604\|ref\|YP_150679.1\| cyclopropane fatty acyl phospholipid synthase [Salmonella enterica subs...	1.0E-79	[1..383]	[1..382]
gi\|81241285, gi\|... - gi\|82777137\|ref\|YP_403486.1\| cyclopropane fatty acyl phospholipid synthase [Shigella dysenteriae Sd1...	8.0E-79	[1..383]	[1..382]
gi\|238787135, gi... - gi\|77975296\|ref\|ZP_00830832.1\| COG2230: Cyclopropane fatty acid synthase and related methyltransfera...	1.0E-78	[1..383]	[1..383]
gi\|77959196 - gi\|77959196\|ref\|ZP_00823218.1\| COG2230: Cyclopropane fatty acid synthase and related methyltransfera...	1.0E-78	[1..383]	[1..383]
gi\|36785930, gi\|... - gi\|37526499\|ref\|NP_929843.1\| cyclopropane fatty acyl phospholipid synthase [Photorhabdus luminescens...	1.0E-78	[1..383]	[1..383]
gi\|238796361, gi... - gi\|77961725\|ref\|ZP_00825557.1\| COG2230: Cyclopropane fatty acid synthase and related methyltransfera...	1.0E-78	[1..383]	[1..383]
gi\|229701964, gi... - gi\|229895076\|ref\|ZP_04510253.1\| cyclopropane-fatty-acyl-phospholipid synthase [Yersinia pestis Pesto... gi\|45441968, gi\|... - gi\|45441968\|ref\|NP_993507.1\| cyclopropane fatty acyl phospholipid synthase [Yersinia pestis biovar M...	2.0E-78	[1..383]	[1..383]
gi\|77633714, gi\|... - gi\|77633714\|ref\|ZP_00795833.1\| COG2230: Cyclopropane fatty acid synthase and related methyltransfera...	2.0E-78	[1..383]	[1..383]
gi\|24113051, gi\|... - gi\|24113051\|ref\|NP_707561.1\| cyclopropane fatty acyl phospholipid synthase [Shigella flexneri 2a str... gi\|30063177, gi\|... - gi\|30063177\|ref\|NP_837348.1\| cyclopropane fatty acyl phospholipid synthase [Shigella flexneri 2a str... gi\|110805639, gi... - gi\|110805639\|ref\|YP_689159.1\| cyclopropane fatty acyl phospholipid synthase [Shigella flexneri 5 str...	2.0E-78	[1..383]	[1..382]

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Predicted Domain #1

Region A:
Residues: [1-314]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSSSCIEDQS VQESPWFRIV QDMLNQADIE INGSRPFDIR VNNPDFFKRV LQGGSLALGE  60
   61 SYMDGWWECD RLDIFFQRVL QAGLEHKLPR HFKDTLRIAA ARVINLQSKR RAWIVGKEHY 120
  121 DLGNDLFTQI LDPNMQYSCA YWKEATSLEQ AQEHKLQMIC EKLQLAPGMK LLDIGCGWGG 180
  181 LAAYAARHFG VSVSGVTISV EQQKLAQQRC EGLDVSILLQ DYRDLNEQFD RIVSVGMFEH 240
  241 VGPKNYSTYF KVVNRNLKPD GLFLLHTIGA NRTNMNVDPW INKYIFPNGC LPSVQHIAQA 300
  301 SEPYFVMEDW HNFG

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	8.69897
Match:	1qzzA
Description:	Crystal structure of aclacinomycin-10-hydroxylase (RdmB) in complex with S-adensyl-L-methionine (SAM)
Matching Structure (courtesy of the PDB):

Predicted functions:

Term	Confidence	Notes
catalytic activity	1.62377578202456	bayes_pls_golite062009
transferase activity	1.20063885869845	bayes_pls_golite062009
transferase activity, transferring one-carbon groups	1.14636302691827	bayes_pls_golite062009
methyltransferase activity	1.12602040164126	bayes_pls_golite062009
transcription factor activity	1.06343802718818	bayes_pls_golite062009
S-adenosylmethionine-dependent methyltransferase activity	0.535429947810431	bayes_pls_golite062009

Predicted Domain #2

Region A:
Residues: [315-383]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 ADYDRTLMAW YERFQAAWPN LSANYSQRFE RMFSYYLNAC AGAFRARDIQ LWQVLFSPNG  60
   61 VNGGIRVPR

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	35.69897
Match:	1kp9A
Description:	CmaA1
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: