YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|108811925, gi...
Organism:	Yersinia pestis Nepal516
Length:	464 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|108811925, gi....

Description	E-value	Query Range	Subject Range
gi\|188015255, gi... - gi\|188015255\|gb\|EDU53377.1\| NAD(P) transhydrogenase, beta subunit [Escherichia coli O157:H7 str. EC4... gi\|189355541, gi... - gi\|189355541\|gb\|EDU73960.1\| NAD(P) transhydrogenase, beta subunit [Escherichia coli O157:H7 str. EC4... gi\|168763698, gi... - gi\|189366180\|gb\|EDU84596.1\| NAD(P) transhydrogenase, beta subunit [Escherichia coli O157:H7 str. EC4... gi\|168771141, gi... - gi\|189360031\|gb\|EDU78450.1\| NAD(P) transhydrogenase, beta subunit [Escherichia coli O157:H7 str. EC4... gi\|187768709, gi... - gi\|187768709\|gb\|EDU32553.1\| NAD(P) transhydrogenase, beta subunit [Escherichia coli O157:H7 str. EC4... gi\|168783422, gi... - gi\|188999230\|gb\|EDU68216.1\| NAD(P) transhydrogenase, beta subunit [Escherichia coli O157:H7 str. EC4... gi\|168789436, gi... - gi\|189370972\|gb\|EDU89388.1\| NAD(P) transhydrogenase, beta subunit [Escherichia coli O157:H7 str. EC8... gi\|209912173, gi... - gi\|209918914\|ref\|YP_002292998.1\| pyridine nucleotide transhydrogenase [Escherichia coli SE11], gi\|20... gi\|217318050, gi... - gi\|217328703\|ref\|ZP_03444784.1\| NAD(P) transhydrogenase, beta subunit [Escherichia coli O157:H7 str.... gi\|218360937, gi... - gi\|218554169\|ref\|YP_002387082.1\| pyridine nucleotide transhydrogenase [Escherichia coli IAI1], gi\|21... gi\|218558472, gi... - gi\|218558472\|ref\|YP_002391385.1\| pyridine nucleotide transhydrogenase [Escherichia coli S88], gi\|218... gi\|218351896, gi... - gi\|218695164\|ref\|YP_002402831.1\| pyridine nucleotide transhydrogenase [Escherichia coli 55989], gi\|2... gi\|218369818, gi... - gi\|218699832\|ref\|YP_002407461.1\| pyridine nucleotide transhydrogenase [Escherichia coli IAI39], gi\|2... gi\|218705102, gi... - gi\|218705102\|ref\|YP_002412621.1\| pyridine nucleotide transhydrogenase [Escherichia coli UMN026], gi\|... gi\|168800859, gi... - gi\|189376895\|gb\|EDU95311.1\| NAD(P) transhydrogenase, beta subunit [Escherichia coli O157:H7 str. EC5... gi\|169754973, gi... - gi\|170020045\|ref\|YP_001724999.1\| pyridine nucleotide transhydrogenase [Escherichia coli ATCC 8739], ... gi\|169889101, gi... - gi\|170081266\|ref\|YP_001730586.1\| pyridine nucleotide transhydrogenase, beta subunit [Escherichia col... gi\|195938992 - gi\|195938992\|ref\|ZP_03084374.1\| pyridine nucleotide transhydrogenase [Escherichia coli O157:H7 str. ... gi\|208725163, gi... - gi\|208810647\|ref\|ZP_03252523.1\| NAD(P) transhydrogenase, beta subunit [Escherichia coli O157:H7 str.... gi\|208816653, gi... - gi\|208816653\|ref\|ZP_03257773.1\| NAD(P) transhydrogenase, beta subunit [Escherichia coli O157:H7 str.... gi\|208819628, gi... - gi\|208819628\|ref\|ZP_03259948.1\| NAD(P) transhydrogenase, beta subunit [Escherichia coli O157:H7 str.... gi\|209158336, gi... - gi\|209396936\|ref\|YP_002270674.1\| NAD(P) transhydrogenase, beta subunit [Escherichia coli O157:H7 str... EG10745 - pyridine nucleotide transhydrogenase, beta subunit / Proton-translocating NAD(P) transhydrogenase, b... PNTB_SHIFL - NAD(P) transhydrogenase subunit beta OS=Shigella flexneri GN=pntB PE=3 SV=1 gi\|24112989, gi\|... - gi\|24112989\|ref\|NP_707499.1\| pyridine nucleotide transhydrogenase [Shigella flexneri 2a str. 301], g... PNTB_ECOL6 - NAD(P) transhydrogenase subunit beta OS=Escherichia coli O6:H1 (strain CFT073 / ATCC 700928 / UPEC) ... gi\|30041365, gi\|... - gi\|30063116\|ref\|NP_837287.1\| pyridine nucleotide transhydrogenase [Shigella flexneri 2a str. 2457T],... PNTB_ECOLI - NAD(P) transhydrogenase subunit beta (EC 1.6.1.2) (Pyridine nucleotide transhydrogenase subunit beta... PNTB_ECO57 - NAD(P) transhydrogenase subunit beta OS=Escherichia coli O157:H7 GN=pntB PE=3 SV=1 PNTB_ECOL6 - NAD(P) transhydrogenase subunit beta OS=Escherichia coli O6 GN=pntB PE=3 SV=1 gi\|254592619, gi... - gi\|254793219\|ref\|YP_003078056.1\| pyridine nucleotide transhydrogenase, beta subunit [Escherichia col... gi\|253973564, gi... - gi\|254161663\|ref\|YP_003044771.1\| pyridine nucleotide transhydrogenase [Escherichia coli B str. REL60... gi\|13361775, gi\|... - gi\|15831562\|ref\|NP_310335.1\| pyridine nucleotide transhydrogenase [Escherichia coli O157:H7 str. Sak... gi\|253977759, gi... - gi\|254288452\|ref\|YP_003054200.1\| pyridine nucleotide transhydrogenase [Escherichia coli BL21(DE3)], ... gi\|110615123, gi... - gi\|110805575\|ref\|YP_689095.1\| pyridine nucleotide transhydrogenase [Shigella flexneri 5 str. 8401], ... gi\|251785060, gi... - gi\|251785060\|ref\|YP_002999364.1\| hypothetical protein B21_01561 [Escherichia coli BL21], gi\|24237733... gi\|238900818, gi... - gi\|238900818\|ref\|YP_002926614.1\| pyridine nucleotide transhydrogenase, beta subunit [Escherichia col... gi\|237705542, gi... - gi\|237705542\|ref\|ZP_04536023.1\| conserved hypothetical protein [Escherichia sp. 3_2_53FAA], gi\|22690... gi\|227886040, gi... - gi\|227886040\|ref\|ZP_04003845.1\| pyridine nucleotide transhydrogenase [Escherichia coli 83972], gi\|22... gi\|1742636, gi\|8... - gi\|89108443\|ref\|AP_002223.1\| pyridine nucleotide transhydrogenase, beta subunit [Escherichia coli st... gi\|91210813, gi\|... - gi\|91210813\|ref\|YP_540799.1\| pyridine nucleotide transhydrogenase [Escherichia coli UTI89], gi\|91072... EG10745 - pyridine nucleotide transhydrogenase, beta subunit / Proton-translocating NAD(P) transhydrogenase, b... gi\|15802016, gi\|... - gi\|15802016\|ref\|NP_288037.1\| pyridine nucleotide transhydrogenase [Escherichia coli O157:H7 EDL933],... gi\|117623788, gi... - gi\|117623788\|ref\|YP_852701.1\| pyridine nucleotide transhydrogenase [Escherichia coli APEC O1], gi\|11... gi\|124529243, gi... - gi\|124529243\|ref\|ZP_01700318.1\| NAD(P) transhydrogenase, beta subunit [Escherichia coli B], gi\|12450... gi\|82776829, gi\|... - gi\|82776829\|ref\|YP_403178.1\| pyridine nucleotide transhydrogenase [Shigella dysenteriae Sd197], gi\|8... gi\|75512965, gi\|... - gi\|75512965\|ref\|ZP_00735446.1\| COG1282: NAD/NADP transhydrogenase beta subunit [Escherichia coli 536... gi\|74312073, gi\|... - gi\|74312073\|ref\|YP_310492.1\| pyridine nucleotide transhydrogenase [Shigella sonnei Ss046], gi\|738555... gi\|194436470, gi... - gi\|83587937\|ref\|ZP_00926563.1\| COG1282: NAD/NADP transhydrogenase beta subunit [Escherichia coli 101... gi\|187731810, gi... - gi\|75178503\|ref\|ZP_00698549.1\| COG1282: NAD/NADP transhydrogenase beta subunit [Shigella boydii BS51... gi\|194419839, gi... - gi\|83570992\|ref\|ZP_00922434.1\| COG1282: NAD/NADP transhydrogenase beta subunit [Shigella dysenteriae... gi\|75212939, gi\|... - gi\|75212939\|ref\|ZP_00712937.1\| COG1282: NAD/NADP transhydrogenase beta subunit [Escherichia coli B17... gi\|192927426, gi... - gi\|75257021\|ref\|ZP_00728581.1\| COG1282: NAD/NADP transhydrogenase beta subunit [Escherichia coli E22... gi\|157155678, gi... - gi\|75190642\|ref\|ZP_00703909.1\| COG1282: NAD/NADP transhydrogenase beta subunit [Escherichia coli E24... gi\|75195682, gi\|... - gi\|75195682\|ref\|ZP_00705752.1\| COG1282: NAD/NADP transhydrogenase beta subunit [Escherichia coli HS]...	0.0	[1..462]	[1..462]
gi\|218689548, gi... - gi\|218689548\|ref\|YP_002397760.1\| pyridine nucleotide transhydrogenase [Escherichia coli ED1a], gi\|21... gi\|110641724, gi... - gi\|110641724\|ref\|YP_669454.1\| pyridine nucleotide transhydrogenase [Escherichia coli 536], gi\|110343... gi\|191174334, gi... - gi\|75236687\|ref\|ZP_00720766.1\| COG1282: NAD/NADP transhydrogenase beta subunit [Escherichia coli F11... gi\|215264850, gi... - gi\|215486778\|ref\|YP_002329209.1\| pyridine nucleotide transhydrogenase [Escherichia coli O127:H6 str....	0.0	[1..462]	[1..462]
gi\|82544031, gi\|... - gi\|82544031\|ref\|YP_407978.1\| pyridine nucleotide transhydrogenase [Shigella boydii Sb227], gi\|812454...	0.0	[1..462]	[1..462]
gi\|37526084, gi\|... - gi\|37526084\|ref\|NP_929428.1\| pyridine nucleotide transhydrogenase [Photorhabdus luminescens subsp. l...	0.0	[1..462]	[1..462]
gi\|192956443, gi... - gi\|75234915\|ref\|ZP_00719194.1\| COG1282: NAD/NADP transhydrogenase beta subunit [Escherichia coli E11...	0.0	[1..462]	[1..462]
gi\|190904067, gi... - gi\|75230949\|ref\|ZP_00717398.1\| COG1282: NAD/NADP transhydrogenase beta subunit [Escherichia coli B7A...	0.0	[1..462]	[1..462]
gi\|102621429 - gi\|102621429\|gb\|ABF71059.1\| NADP transhydrogenase beta subunit [Enterobacter cloacae]	0.0	[1..462]	[1..462]
gi\|29141853, gi\|... - gi\|29141853\|ref\|NP_805195.1\| pyridine nucleotide transhydrogenase [Salmonella enterica subsp. enteri... gi\|56127812, gi\|... - gi\|56413555\|ref\|YP_150630.1\| pyridine nucleotide transhydrogenase [Salmonella enterica subsp. enteri... gi\|16760383 - gi\|16760383\|ref\|NP_456000.1\| pyridine nucleotide transhydrogenase [Salmonella enterica subsp. enteri... gi\|16502678, gi\|... - gi\|25284880\|pir\|\|AI0682 NAD(P) transhydrogenase (B-specific) (EC 1.6.1.1) - Salmonella enterica subs... gi\|16419999, gi\|... - gi\|16764825\|ref\|NP_460440.1\| pyridine nucleotide transhydrogenase [Salmonella typhimurium LT2], gi\|1... gi\|238911712 - gi\|238911712\|ref\|ZP_04655549.1\| pyridine nucleotide transhydrogenase [Salmonella enterica subsp. ent... gi\|168229859, gi... - gi\|205335518\|gb\|EDZ22282.1\| NAD(P) transhydrogenase, beta subunit [Salmonella enterica subsp. enteri... gi\|205327685, gi... - gi\|205327685\|gb\|EDZ14449.1\| NAD(P) transhydrogenase, beta subunit [Salmonella enterica subsp. enteri... gi\|167551545, gi... - gi\|205323549\|gb\|EDZ11388.1\| NAD(P) transhydrogenase, beta subunit [Salmonella enterica subsp. enteri... gi\|161614096, gi... - gi\|161614096\|ref\|YP_001588061.1\| pyridine nucleotide transhydrogenase [Salmonella enterica subsp. en... gi\|195634188, gi... - gi\|195634188\|gb\|EDX52540.1\| NAD(P) transhydrogenase, beta subunit [Salmonella enterica subsp. enteri... gi\|168260356, gi... - gi\|205350940\|gb\|EDZ37571.1\| NAD(P) transhydrogenase, beta subunit [Salmonella enterica subsp. enteri... gi\|205339540, gi... - gi\|205339540\|gb\|EDZ26304.1\| NAD(P) transhydrogenase, beta subunit [Salmonella enterica subsp. enteri... gi\|168235559, gi... - gi\|197291149\|gb\|EDY30502.1\| NAD(P) transhydrogenase, beta subunit [Salmonella enterica subsp. enteri... lcl\|NC_016856.1_... - [gene=pntB] [protein=pyridine nucleotide transhydrogenase] [protein_id=YP_005237357.1] [location=156... gi\|161503424, gi... - gi\|161503424\|ref\|YP_001570536.1\| pyridine nucleotide transhydrogenase [Salmonella enterica subsp. ar... gi\|213609351 - gi\|213609351\|ref\|ZP_03369177.1\| pyridine nucleotide transhydrogenase [Salmonella enterica subsp. ent... gi\|213424137 - gi\|213424137\|ref\|ZP_03357019.1\| pyridine nucleotide transhydrogenase [Salmonella enterica subsp. ent... gi\|205352810, gi... - gi\|205352810\|ref\|YP_002226611.1\| pyridine nucleotide transhydrogenase [Salmonella enterica subsp. en... gi\|204927632, gi... - gi\|204927632\|ref\|ZP_03218833.1\| NAD(P) transhydrogenase, beta subunit [Salmonella enterica subsp. en... gi\|224468540, gi... - gi\|224584013\|ref\|YP_002637811.1\| pyridine nucleotide transhydrogenase [Salmonella enterica subsp. en... gi\|213999332 - gi\|213999332\|ref\|ZP_03410067.1\| pyridine nucleotide transhydrogenase [Salmonella enterica subsp. ent... gi\|194457033, gi... - gi\|194470669\|ref\|ZP_03076653.1\| NAD(P) transhydrogenase, beta subunit [Salmonella enterica subsp. en... gi\|194408065, gi... - gi\|194449761\|ref\|YP_002045516.1\| pyridine nucleotide transhydrogenase [Salmonella enterica subsp. en... gi\|194444194, gi... - gi\|194444194\|ref\|YP_002040727.1\| NAD(P) transhydrogenase, beta subunit [Salmonella enterica subsp. e... gi\|205343863, gi... - gi\|205343863\|gb\|EDZ30627.1\| NAD(P) transhydrogenase, beta subunit [Salmonella enterica subsp. enteri... gi\|199602297, gi... - gi\|200389852\|ref\|ZP_03216463.1\| NAD(P) transhydrogenase, beta subunit [Salmonella enterica subsp. en... gi\|197241783, gi... - gi\|197263528\|ref\|ZP_03163602.1\| NAD(P) transhydrogenase, beta subunit [Salmonella enterica subsp. en... gi\|197251418, gi... - gi\|197251418\|ref\|YP_002146565.1\| NAD(P) transhydrogenase, beta subunit [Salmonella enterica subsp. e... gi\|194710685, gi... - gi\|194735183\|ref\|YP_002114494.1\| NAD(P) transhydrogenase, beta subunit [Salmonella enterica subsp. e...	0.0	[1..462]	[1..462]
gi\|62127701, gi\|... - gi\|62180068\|ref\|YP_216485.1\| pyridine nucleotide transhydrogenase [Salmonella enterica subsp. enteri...	0.0	[1..462]	[1..462]
gi\|77975378 - gi\|77975378\|ref\|ZP_00830914.1\| COG1282: NAD/NADP transhydrogenase beta subunit [Yersinia frederiksen...	0.0	[1..462]	[1..463]

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Predicted Domain #1

Region A:
Residues: [1-191]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSSGLVTAAY IVAAILFIFS LAGLSRHETS RQGNSFGVAG MAIALIATIL GPDSSNVAWI  60
   61 IIAMVIGGAI GIYLAKKVEM TEMPELVAIL HSFVGLAAVL VGFNSYLDHG SMMDAVMENI 120
  121 HLTEVFLGIF IGAVTFTGSI VAFGKLRGVI SSKPLMLPQR HKLNLVALVV SFLLMVTFVR 180
  181 TESITLQVVA L

[Run NCBI BLAST on this sequence.]

Detection Method:

MSA

Shown below are all of our structure predictions for this domain.
Click here to view only most confident match.

Found no structure predictions for this domain.

Predicted Domain #2

Region A:
Residues: [192-288]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 LLMTLIALGF GWHLVASIGG ADMPVVVSML NSYSGWAAAA AGFMLSNDLL IVTGALVGSS  60
   61 GAILSYIMCK AMNRSFISVI AGGFGTDGSS TGNAEEM

[Run NCBI BLAST on this sequence.]

Detection Method:

deduced

Shown below are all of our de novo (Rosetta) predictions for this domain.
Click here to view only most confident match.

Found no structure predictions for this domain.

Predicted Domain #3

Region A:
Residues: [289-464]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 GEYREATAED VAEQLRNASS VIITPGYGMA VAQAQYPVAE ITAKLQARGI KVRFGIHPVA  60
   61 GRLPGHMNVL LAEAKVPYDV VLEMDEINDD FSSTDVVLVI GANDTVNPAA LEDPRSPIAG 120
  121 MPVLEVWKAH SVIAFKRSMN TGYAGVQNPL FFKENTQMLF GDAKDSVEAI LRALNN

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	91.045757
Match:	2bruC
Description:	No description for 2bruC was found.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits