YRC Public Data Repository - Protein Structure Prediction

Protein:	MINC_YERPA
Organism:	Yersinia pestis Antiqua
Length:	228 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

[What does the above image mean?]

[Show Ginzu Version Information]

Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for MINC_YERPA.

Description	E-value	Query Range	Subject Range
gi\|238723409, gi... - gi\|77973551\|ref\|ZP_00829098.1\| COG0850: Septum formation inhibitor [Yersinia frederiksenii ATCC 3364...	2.0E-78	[1..228]	[1..228]
gi\|77962229, gi\|... - gi\|77962229\|ref\|ZP_00826052.1\| COG0850: Septum formation inhibitor [Yersinia mollaretii ATCC 43969],...	4.0E-78	[1..228]	[1..228]
gi\|238782533, gi... - gi\|77959238\|ref\|ZP_00823260.1\| COG0850: Septum formation inhibitor [Yersinia bercovieri ATCC 43970],...	9.0E-78	[1..228]	[1..228]
gi\|238794479, gi... - gi\|77977704\|ref\|ZP_00833146.1\| COG0850: Septum formation inhibitor [Yersinia intermedia ATCC 29909],...	1.0E-77	[1..228]	[1..228]
gi\|168241406, gi... - gi\|205339378\|gb\|EDZ26142.1\| septum site-determining protein MinC [Salmonella enterica subsp. enteric... gi\|168259949, gi... - gi\|205351032\|gb\|EDZ37663.1\| septum site-determining protein MinC [Salmonella enterica subsp. enteric... gi\|168462694, gi... - gi\|195633974\|gb\|EDX52326.1\| septum site-determining protein MinC [Salmonella enterica subsp. enteric... gi\|168820563, gi... - gi\|205342617\|gb\|EDZ29381.1\| septum site-determining protein MinC [Salmonella enterica subsp. enteric... gi\|205328658, gi... - gi\|205328658\|gb\|EDZ15422.1\| septum site-determining protein MinC [Salmonella enterica subsp. enteric... gi\|168237879, gi... - gi\|197289201\|gb\|EDY28568.1\| septum site-determining protein MinC [Salmonella enterica subsp. enteric... gi\|213648381 - gi\|213648381\|ref\|ZP_03378434.1\| septum formation inhibitor [Salmonella enterica subsp. enterica sero... gi\|214002611 - gi\|214002611\|ref\|ZP_03413346.1\| septum formation inhibitor [Salmonella enterica subsp. enterica sero... lcl\|NC_016856.1_... - [gene=minC] [protein=septum formation inhibitor] [protein_id=YP_005237752.1] [location=1922776..1923... MINC_SALPC - Probable septum site-determining protein MinC OS=Salmonella paratyphi C (strain RKS4594) GN=minC PE=... MINC_SALTY - Septum site-determining protein MinC OS=Salmonella typhimurium GN=minC PE=1 SV=1 MINC_SALPB - Probable septum site-determining protein minC OS=Salmonella paratyphi B (strain ATCC BAA-1250 / SPB7... gi\|200390288, gi... - gi\|200390288\|ref\|ZP_03216899.1\| septum site-determining protein MinC [Salmonella enterica subsp. ent... MINC_SALPA - Probable septum site-determining protein MinC OS=Salmonella paratyphi A GN=minC PE=3 SV=1 MINC_SALG2 - Probable septum site-determining protein MinC OS=Salmonella gallinarum (strain 287/91 / NCTC 13346) ... MINC_SALCH - Probable septum site-determining protein minC OS=Salmonella choleraesuis GN=minC PE=3 SV=1 gi\|213052597 - gi\|213052597\|ref\|ZP_03345475.1\| septum formation inhibitor [Salmonella enterica subsp. enterica sero... MINC_SALCH - Probable septum site-determining protein MinC OS=Salmonella choleraesuis (strain SC-B67) GN=minC PE=... gi\|213426612 - gi\|213426612\|ref\|ZP_03359362.1\| septum formation inhibitor [Salmonella enterica subsp. enterica sero... MINC_SALA4 - Probable septum site-determining protein MinC OS=Salmonella agona (strain SL483) GN=minC PE=3 SV=1 gi\|197265278, gi... - gi\|197265278\|ref\|ZP_03165352.1\| septum site-determining protein MinC [Salmonella enterica subsp. ent... MINC_SALCH - Probable septum site-determining protein MinC OS=Salmonella choleraesuis GN=minC PE=3 SV=1 MINC_SALPK - Probable septum site-determining protein MinC OS=Salmonella paratyphi A (strain AKU_12601) GN=minC P... MINC_SALDC - Probable septum site-determining protein MinC OS=Salmonella dublin (strain CT_02021853) GN=minC PE=3... MINC_SALNS - Probable septum site-determining protein MinC OS=Salmonella newport (strain SL254) GN=minC PE=3 SV=1 MINC_SALHS - Probable septum site-determining protein MinC OS=Salmonella heidelberg (strain SL476) GN=minC PE=3 S... gi\|194468584, gi... - gi\|194468584\|ref\|ZP_03074568.1\| septum site-determining protein MinC [Salmonella enterica subsp. ent... MINC_SALSV - Probable septum site-determining protein MinC OS=Salmonella schwarzengrund (strain CVM19633) GN=minC... MINC_SALPB - Probable septum site-determining protein MinC OS=Salmonella paratyphi B (strain ATCC BAA-1250 / SPB7... MINC_SALTI - Septum site-determining protein minC OS=Salmonella typhi GN=minC PE=3 SV=1 MINC_SALTY - Septum site-determining protein minC OS=Salmonella typhimurium GN=minC PE=3 SV=1 gi\|16760704 - gi\|16760704\|ref\|NP_456321.1\| septum formation inhibitor [Salmonella enterica subsp. enterica serovar... gi\|238912121 - gi\|238912121\|ref\|ZP_04655958.1\| septum formation inhibitor [Salmonella enterica subsp. enterica sero... MINC_SALPA - Probable septum site-determining protein MinC OS=Salmonella paratyphi A (strain ATCC 9150 / SARB42) ... MINC_SALTY - Septum site-determining protein MinC OS=Salmonella typhimurium (strain LT2 / SGSC1412 / ATCC 700720)... gi\|29137165, gi\|... - gi\|29141538\|ref\|NP_804880.1\| septum formation inhibitor [Salmonella enterica subsp. enterica serovar... MINC_SALTI - Septum site-determining protein MinC OS=Salmonella typhi GN=minC PE=3 SV=1	2.0E-74	[1..228]	[1..235]
gi\|75195330 - gi\|75195330\|ref\|ZP_00705400.1\| COG0850: Septum formation inhibitor [Escherichia coli HS] gi\|75511642 - gi\|75511642\|ref\|ZP_00734289.1\| COG0850: Septum formation inhibitor [Escherichia coli 53638] MINC_ECODH - Probable septum site-determining protein MinC OS=Escherichia coli (strain K12 / DH10B) GN=minC PE=3 ... MINC_ECOLC - Probable septum site-determining protein MinC OS=Escherichia coli (strain ATCC 8739 / DSM 1576 / Cro... gi\|73671293\|gb\|A... - MinC [Escherichia coli] EG10596 - inhibitor of FtsZ ring polymerization / Inhibitor of FtsZ ring polymerization gi\|194424066, gi... - gi\|83587321\|ref\|ZP_00925949.1\| COG0850: Septum formation inhibitor [Escherichia coli 101-1], gi\|1944... gi\|1651575, gi\|8... - gi\|89108021\|ref\|AP_001801.1\| cell division inhibitor [Escherichia coli str. K-12 substr. W3110], gi\|... MINC_ECOLI - Septum site-determining protein minC - Escherichia coli MINC_ECOBW - Probable septum site-determining protein MinC OS=Escherichia coli (strain K12 / MC4100 / BW2952) GN=... EG10596 - inhibitor of FtsZ ring polymerization / Inhibitor of FtsZ ring polymerization gi\|251784684, gi... - gi\|251784684\|ref\|YP_002998988.1\| hypothetical protein B21_01161 [Escherichia coli BL21], gi\|24237695... gi\|253773825, gi... - gi\|254288067\|ref\|YP_003053815.1\| septum formation inhibitor [Escherichia coli BL21(DE3)], gi\|2539773... gi\|254161259, gi... - gi\|254161259\|ref\|YP_003044367.1\| septum formation inhibitor [Escherichia coli B str. REL606], gi\|253... gi\|124498082, gi... - gi\|124532297\|ref\|ZP_01702191.1\| septum site-determining protein MinC [Escherichia coli B], gi\|124498...	2.0E-73	[1..228]	[1..231]
MINC_PHOLL - Probable septum site-determining protein minC OS=Photorhabdus luminescens subsp. laumondii GN=minC P... MINC_PHOLL - Probable septum site-determining protein MinC OS=Photorhabdus luminescens subsp. laumondii (strain D...	3.0E-71	[1..227]	[1..226]
gi\|24112562, gi\|... - ref\|NP_707072.1\| cell division inhibitor, inhibits ftsZ ring formation [Shigella flexneri 2a str. 30... gi\|110805173, gi... - gi\|110805173\|ref\|YP_688693.1\| cell division inhibitor, inhibits ftsZ ring formation [Shigella flexne...	5.0E-71	[1..228]	[6..236]
gi\|56383391, gi\|... - gi\|56479840\|ref\|NP_707072.2\| septum formation inhibitor [Shigella flexneri 2a str. 301], gi\|56383391... MINC_SHIFL - Septum site-determining protein MinC OS=Shigella flexneri GN=minC PE=3 SV=1 gi\|30062693, gi\|... - gi\|30062693\|ref\|NP_836864.1\| septum formation inhibitor [Shigella flexneri 2a str. 2457T], gi\|300409... gi\|162139348 - gi\|162139348\|ref\|YP_688693.2\| septum formation inhibitor [Shigella flexneri 5 str. 8401]	6.0E-71	[1..228]	[1..231]
gi\|91071962, gi\|... - gi\|91210388\|ref\|YP_540374.1\| septum site-determining protein MinC [Escherichia coli UTI89], gi\|91071... gi\|187430922, gi... - gi\|187733930\|ref\|YP_001879956.1\| septum site-determining protein MinC [Shigella boydii CDC 3083-94],... gi\|237705128, gi... - gi\|237705128\|ref\|ZP_04535609.1\| septum site-determining protein MinC [Escherichia sp. 3_2_53FAA], gi...	2.0E-70	[1..228]	[6..236]

Back

Predicted Domain #1

Region A:
Residues: [1-228]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSQSPIELKG SSFTLSVVHL HDSRPEVIRQ ALQEKVDQAP AFLKNAPVVI NVATLPNGAN  60
   61 WKDLQQAVTS AGLRIVGISG CQDERQKRAI ARAGLPLLSE GKGQKLAPEP VISPPENVPT 120
  121 QTRIINTPVR SGQQIYARNC DLIVISSVSA GAELIADGNI HIYGMMRGRA LAGASGDAKC 180
  181 QIFCTHLGAE LVSIAGQYWL SDQIPLEYFG QAARLYLQDN TLTIQPLN

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	36.39794
Match:	1hf2A
Description:	Cell-division inhibitor MinC, C-terminal domain; Cell-division inhibitor MinC, N-terminal domain
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits