YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|89105601, gi\|...
Organism:	Yersinia pestis biovar Orientalis str. IP275
Length:	135 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|89105601, gi|....

Description	E-value	Query Range	Subject Range
gi\|22126533, gi\|... - gi\|22126533\|ref\|NP_669956.1\| hypothetical protein y2654 [Yersinia pestis KIM], gi\|21959534\|gb\|AAM862... gi\|45436089, gi\|... - gi\|45441229\|ref\|NP_992768.1\| hypothetical protein YP_1404 [Yersinia pestis biovar Microtus str. 9100...	3.0E-31	[1..135]	[14..148]
gi\|77975902 - gi\|77975902\|ref\|ZP_00831436.1\| COG1380: Putative effector of murein hydrolase LrgA [Yersinia frederi...	4.0E-29	[1..135]	[1..135]
gi\|238793459, gi... - gi\|77978846\|ref\|ZP_00834270.1\| COG1380: Putative effector of murein hydrolase LrgA [Yersinia interme...	5.0E-29	[1..135]	[1..135]
gi\|77959262, gi\|... - gi\|77959262\|ref\|ZP_00823283.1\| COG1380: Putative effector of murein hydrolase LrgA [Yersinia bercovi...	1.0E-28	[1..135]	[1..135]
Y2828_ERWCT - UPF0299 membrane protein ECA2828 OS=Erwinia carotovora subsp. atroseptica GN=ECA2828 PE=3 SV=1 Y2828_PECAS - UPF0299 membrane protein ECA2828 OS=Pectobacterium atrosepticum (strain SCRI 1043 / ATCC BAA-672) GN...	1.0E-28	[1..130]	[1..130]
gi\|94311862, gi\|... - gi\|94311862\|ref\|YP_585072.1\| LrgA [Ralstonia metallidurans CH34], gi\|93355714\|gb\|ABF09803.1\| LrgA [R...	1.0E-26	[11..132]	[1..122]
gi\|26248521, gi\|... - gi\|26248521\|ref\|NP_754561.1\| hypothetical protein c2673 [Escherichia coli CFT073], gi\|26108926\|gb\|AA... gi\|24052575, gi\|... - ref\|NP_708041.1\| hypothetical protein SF2226 [Shigella flexneri 2a str. 301], gb\|AAN43748.1\| orf, c... gi\|226900972, gi... - gi\|237704606\|ref\|ZP_04535087.1\| conserved hypothetical protein [Escherichia sp. 3_2_53FAA], gi\|22690... gi\|91211427, gi\|... - gi\|91211427\|ref\|YP_541413.1\| hypothetical protein UTI89_C2414 [Escherichia coli UTI89], gi\|91073001\|...	3.0E-26	[1..128]	[13..140]
gi\|77962480 - gi\|77962480\|ref\|ZP_00826300.1\| COG1380: Putative effector of murein hydrolase LrgA [Yersinia mollare...	3.0E-26	[1..135]	[1..135]
gi\|83588122, gi\|... - gi\|83588122\|ref\|ZP_00926747.1\| COG1380: Putative effector of murein hydrolase LrgA [Escherichia coli... YOHJ_ECOHS - UPF0299 membrane protein YohJ OS=Escherichia coli O9:H4 (strain HS) GN=yohJ PE=3 SV=1 sp\|B7UFF7\|YOHJ_ECO27 - UPF0299 membrane protein yohJ OS=Escherichia coli O127:H6 (strain E2348/69 / EPEC) GN=yohJ PE=3 SV=1 YOHJ_ECOK1 - UPF0299 membrane protein YohJ OS=Escherichia coli O1:K1 / APEC GN=yohJ PE=3 SV=1 gi\|124526718, gi... - gi\|124526718\|ref\|ZP_01698627.1\| LrgA family protein [Escherichia coli B], gi\|124501774\|gb\|EAY49236.1... YOHJ_ECO45 - UPF0299 membrane protein YohJ OS=Escherichia coli O45:K1 (strain S88 / ExPEC) GN=yohJ PE=3 SV=1 YOHJ_ECO8A - UPF0299 membrane protein YohJ OS=Escherichia coli O8 (strain IAI1) GN=yohJ PE=3 SV=1 EG12023 - UPF0299 family inner membrane protein / UPF0299 family inner membrane protein, function unknown YOHJ_ECO55 - UPF0299 membrane protein YohJ OS=Escherichia coli (strain 55989 / EAEC) GN=yohJ PE=3 SV=1 YOHJ_SHIFL - UPF0299 membrane protein YohJ OS=Shigella flexneri GN=yohJ PE=3 SV=1 YOHJ_ECO81 - UPF0299 membrane protein YohJ OS=Escherichia coli O81 (strain ED1a) GN=yohJ PE=3 SV=1 YOHJ_ECOLU - UPF0299 membrane protein YohJ OS=Escherichia coli O17:K52:H18 (strain UMN026 / ExPEC) GN=yohJ PE=3 S... YOHJ_ECO7I - UPF0299 membrane protein YohJ OS=Escherichia coli O7:K1 (strain IAI39 / ExPEC) GN=yohJ PE=3 SV=1 YOHJ_ECOLI - UPF0299 membrane protein yohJ - Escherichia coli YOHJ_ECOL6 - UPF0299 membrane protein yohJ OS=Escherichia coli O6 GN=yohJ PE=3 SV=1 YOHJ_ECOSM - UPF0299 membrane protein YohJ OS=Escherichia coli (strain SMS-3-5 / SECEC) GN=yohJ PE=3 SV=1 YOHJ_ECODH - UPF0299 membrane protein YohJ OS=Escherichia coli (strain K12 / DH10B) GN=yohJ PE=3 SV=1 YOHJ_ECO27 - UPF0299 membrane protein YohJ OS=Escherichia coli O127:H6 (strain E2348/69 / EPEC) GN=yohJ PE=3 SV=1 YOHJ_ECOSE - UPF0299 membrane protein YohJ OS=Escherichia coli (strain SE11) GN=yohJ PE=3 SV=1 YOHJ_ECOL6 - UPF0299 membrane protein YohJ OS=Escherichia coli O6:H1 (strain CFT073 / ATCC 700928 / UPEC) GN=yohJ... gi\|30063585, gi\|... - gi\|30063585\|ref\|NP_837756.1\| hypothetical protein S2355 [Shigella flexneri 2a str. 2457T], gi\|300418... EG12023 - UPF0299 family inner membrane protein / UPF0299 family inner membrane protein, function unknown gi\|56480051, gi\|... - gi\|56480051\|ref\|NP_708041.2\| hypothetical protein SF2226 [Shigella flexneri 2a str. 301], gi\|5638360... YOHJ_ECOL5 - UPF0299 membrane protein YohJ OS=Escherichia coli O6:K15:H31 (strain 536 / UPEC) GN=yohJ PE=3 SV=1 gi\|190909774, gi... - gi\|75242958\|ref\|ZP_00726664.1\| COG1380: Putative effector of murein hydrolase LrgA [Escherichia coli... gi\|75259613, gi\|... - gi\|75259613\|ref\|ZP_00730915.1\| COG1380: Putative effector of murein hydrolase LrgA [Escherichia coli... gi\|194414820, gi... - gi\|75211557\|ref\|ZP_00711636.1\| COG1380: Putative effector of murein hydrolase LrgA [Escherichia coli... gi\|191165375, gi... - gi\|75231520\|ref\|ZP_00717889.1\| COG1380: Putative effector of murein hydrolase LrgA [Escherichia coli... gi\|227887196, gi... - gi\|227887196\|ref\|ZP_04005001.1\| murein hydrolase regulator LrgA [Escherichia coli 83972], gi\|2278355... YOHJ_SHIBS - UPF0299 membrane protein YohJ OS=Shigella boydii serotype 4 (strain Sb227) GN=yohJ PE=3 SV=1 YOHJ_ECOLC - UPF0299 membrane protein YohJ OS=Escherichia coli (strain ATCC 8739 / DSM 1576 / Crooks) GN=yohJ PE=... YOHJ_ECOBW - UPF0299 membrane protein YohJ OS=Escherichia coli (strain K12 / MC4100 / BW2952) GN=yohJ PE=3 SV=1 gi\|89108958, gi\|... - gi\|89108958\|ref\|AP_002738.1\| conserved inner membrane protein [Escherichia coli str. K-12 substr. W3... gi\|242377783, gi... - gi\|251785510\|ref\|YP_002999814.1\| hypothetical protein B21_02029 [Escherichia coli BL21], gi\|24237778... gi\|188491706, gi... - gi\|75514520\|ref\|ZP_00736798.1\| COG1380: Putative effector of murein hydrolase LrgA [Escherichia coli... gi\|253772932, gi... - gi\|254288917\|ref\|YP_003054665.1\| hypothetical protein ECD_02070 [Escherichia coli BL21(DE3)], gi\|253... YOHJ_SHISS - UPF0299 membrane protein YohJ OS=Shigella sonnei (strain Ss046) GN=yohJ PE=3 SV=1 gi\|253974056, gi... - gi\|254162155\|ref\|YP_003045263.1\| hypothetical protein ECB_02070 [Escherichia coli B str. REL606], gi...	8.0E-26	[1..128]	[1..128]
gi\|189362790, gi... - gi\|189362790\|gb\|EDU81209.1\| LrgA family protein [Escherichia coli O157:H7 str. EC4486], gi\|168767754... gi\|168773148, gi... - gi\|187771327\|gb\|EDU35171.1\| LrgA family protein [Escherichia coli O157:H7 str. EC4196], gi\|168773148... gi\|15802697, gi\|... - gi\|15802697\|ref\|NP_288724.1\| hypothetical protein Z3396 [Escherichia coli O157:H7 EDL933], gi\|125164... gi\|75234029, gi\|... - gi\|75234029\|ref\|ZP_00718446.1\| COG1380: Putative effector of murein hydrolase LrgA [Escherichia coli... gi\|189002192, gi... - gi\|189002192\|gb\|EDU71178.1\| LrgA family protein [Escherichia coli O157:H7 str. EC4076], gi\|168779984... gi\|209766346, gi... - pir\|\|C85852 hypothetical protein yohJ [imported] - Escherichia coli (strain O157:H7, substrain EDL9... YOHJ_ECO24 - UPF0299 membrane protein YohJ OS=Escherichia coli O139:H28 (strain E24377A / ETEC) GN=yohJ PE=3 SV=1 gi\|189371406, gi... - gi\|189371406\|gb\|EDU89822.1\| LrgA family protein [Escherichia coli O157:H7 str. EC869], gi\|168788951\|... gi\|168801170, gi... - gi\|189376628\|gb\|EDU95044.1\| LrgA family protein [Escherichia coli O157:H7 str. EC508], gi\|168801170\|... gi\|15832287, gi\|... - gi\|15832287\|ref\|NP_311060.1\| hypothetical protein ECs3033 [Escherichia coli O157:H7 str. Sakai], gi\|... gi\|195935517 - gi\|195935517\|ref\|ZP_03080899.1\| hypothetical protein EscherichcoliO157_03512 [Escherichia coli O157:... gi\|208806318, gi... - gi\|208806318\|ref\|ZP_03248655.1\| LrgA family protein [Escherichia coli O157:H7 str. EC4206], gi\|20872... gi\|208814119, gi... - gi\|208814119\|ref\|ZP_03255448.1\| LrgA family protein [Escherichia coli O157:H7 str. EC4045], gi\|20873... gi\|254593440, gi... - gi\|254794040\|ref\|YP_003078877.1\| conserved inner membrane protein [Escherichia coli O157:H7 str. TW1... gi\|168750521, gi... - gi\|188015334\|gb\|EDU53456.1\| LrgA family protein [Escherichia coli O157:H7 str. EC4113], gi\|168750521... gi\|168757723, gi... - gi\|189355368\|gb\|EDU73787.1\| LrgA family protein [Escherichia coli O157:H7 str. EC4401], gi\|168757723... gi\|168763797, gi... - gi\|189366072\|gb\|EDU84488.1\| LrgA family protein [Escherichia coli O157:H7 str. EC4501], gi\|168763797... YOHJ_ECO57 - UPF0299 membrane protein YohJ OS=Escherichia coli O157:H7 GN=yohJ PE=3 SV=1 gi\|208819983, gi... - gi\|208819983\|ref\|ZP_03260303.1\| LrgA family protein [Escherichia coli O157:H7 str. EC4042], gi\|20874... YOHJ_ECO5E - UPF0299 membrane protein YohJ OS=Escherichia coli O157:H7 (strain EC4115 / EHEC) GN=yohJ PE=3 SV=1 gi\|217327487, gi... - gi\|217327487\|ref\|ZP_03443570.1\| LrgA family protein [Escherichia coli O157:H7 str. TW14588], gi\|2173...	8.0E-26	[1..128]	[1..128]

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Predicted Domain #1

Region A:
Residues: [1-135]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MRNMMSLCWQ YLRAFTIIYL CLWAGKALAL LLPIVIPGSI IGMLILFVLL TLQILPSPWV  60
   61 KPSCQLLIRY MALLFVPIGV GVMQYYEQLT KQFGPIVVSC FISTLIVMLV VAYSSHYVHR 120
  121 DRKVISPSTP TEGEK

[Run NCBI BLAST on this sequence.]

Detection Method:	Pfam
Confidence:	46.657577
Match:	PF03788.5
Description:	No description for PF03788.5 was found.

Shown below are all of our structure predictions for this domain.
Click here to view only most confident match.

		MCM Score	GO Score	GO Term	SCOP Match	SCOP Description
View	Download	0.697	0.250	membrane	a.1.1	Globin-like
View	Download	0.690	0.089	membrane	a.91.1	Regulator of G-protein signalling, RGS
View	Download	0.864	0.000	integral to membrane	a.74.1	Cyclin-like
View	Download	0.649	0.000	integral to membrane	d.96.1	Tetrahydrobiopterin biosynthesis enzymes-like
View	Download	0.760	N/A	N/A	a.74.1	Cyclin-like

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits