YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|78522571
Organism:	Chlamydomonas incerta
Length:	203 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|78522571.

Description	E-value	Query Range	Subject Range
gi\|1616614 - gi\|1616614\|emb\|CAA69701.1\| small GTP-binding protein [Nicotiana plumbaginifolia]	231.0	[0..1]	[202..1]
ARA5_ARATH - Ras-related protein ARA-5 - Arabidopsis thaliana (Mouse-ear cress)	230.0	[0..1]	[202..56]
gi\|421942, gi\|311907 - pir\|\|S34253 GTP-binding protein, ras-related - common tobacco, gi\|311907\|emb\|CAA51011.1\| ras-related...	230.0	[0..1]	[202..1]
YPTV1_VOLCA - GTP-binding protein yptV1 OS=Volvox carteri GN=YPTV1 PE=3 SV=1	229.0	[0..1]	[203..1]
gi\|7643790 - gi\|7643790\|gb\|AAF65510.1\| small GTP-binding protein [Capsicum annuum]	229.0	[0..1]	[202..1]
gi\|1053063 - gi\|1053063\|gb\|AAA80678.1\| small GTP-binding protein	229.0	[0..1]	[202..1]
gi\|109511883 - gi\|109511883\|ref\|XP_001061706.1\| PREDICTED: similar to Ras-related protein Rab-1B [Rattus norvegicus...	229.0	[0..1]	[202..88]
gi\|37360618 - gi\|37360618\|dbj\|BAC98287.1\| mKIAA3012 protein [Mus musculus]	228.0	[0..1]	[203..52]
gi\|145348815, gi... - gi\|145348815\|ref\|XP_001418839.1\| predicted protein [Ostreococcus lucimarinus CCE9901], gi\|144579069\|... gi\|116058638 - gi\|116058638\|emb\|CAL54345.1\| YptC1 (ISS) [Ostreococcus tauri]	228.0	[0..1]	[202..1]

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Predicted Domain #1

Region A:
Residues: [1-203]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MNPEYDYLFK LLLIGDSGVG KSCLLLRFAD DTYTESYIST IGVDFKIRTV ELDGKVIKLQ  60
   61 IWDTAGQERF RTITSSYYRG AHGIIVVYDV TDQESFNNVK QWLNEIDRYA SENVNKLLVG 120
  121 NKSDLTSKKV VEYSVAKAFA DEIGIPFLET SAKNATNVEQ AFMTMAAEIK NRMASQPIPT 180
  181 KAGGPVVRPQ EGKPINSKSS SCC

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	54.045757
Match:	2folA
Description:	Crystal structure of human RAB1A in complex with GDP
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits