YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|15832287, gi\|...
Organism:	Escherichia coli O157:H7 str. Sakai
Length:	132 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

[What does the above image mean?]

[Show Ginzu Version Information]

Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|15832287, gi|....

Description	E-value	Query Range	Subject Range
gi\|77975902 - gi\|77975902\|ref\|ZP_00831436.1\| COG1380: Putative effector of murein hydrolase LrgA [Yersinia frederi...	130.0	[0..1]	[132..1]
gi\|238793459, gi... - gi\|77978846\|ref\|ZP_00834270.1\| COG1380: Putative effector of murein hydrolase LrgA [Yersinia interme...	128.0	[0..1]	[132..1]
Y2828_ERWCT - UPF0299 membrane protein ECA2828 OS=Erwinia carotovora subsp. atroseptica GN=ECA2828 PE=3 SV=1 Y2828_PECAS - UPF0299 membrane protein ECA2828 OS=Pectobacterium atrosepticum (strain SCRI 1043 / ATCC BAA-672) GN...	128.0	[0..1]	[132..1]
gi\|77959262, gi\|... - gi\|77959262\|ref\|ZP_00823283.1\| COG1380: Putative effector of murein hydrolase LrgA [Yersinia bercovi...	127.0	[0..1]	[132..1]
gi\|22126533, gi\|... - gi\|22126533\|ref\|NP_669956.1\| hypothetical protein y2654 [Yersinia pestis KIM], gi\|21959534\|gb\|AAM862... gi\|45436089, gi\|... - gi\|45441229\|ref\|NP_992768.1\| hypothetical protein YP_1404 [Yersinia pestis biovar Microtus str. 9100...	127.0	[0..1]	[132..14]
Y1529_YERPS - UPF0299 membrane protein YPTB1529 OS=Yersinia pseudotuberculosis GN=YPTB1529 PE=3 SV=1 Y1514_YERPE - UPF0299 membrane protein YPO1514/y2654/YP_1404 OS=Yersinia pestis GN=YPO1514 PE=3 SV=2 gi\|229841494, gi... - gi\|229841494\|ref\|ZP_04461653.1\| conserved inner membrane protein [Yersinia pestis biovar Orientalis ... gi\|229689214, gi... - gi\|229843606\|ref\|ZP_04463749.1\| conserved inner membrane protein [Yersinia pestis biovar Orientalis ... gi\|229894290, gi... - gi\|229894290\|ref\|ZP_04509473.1\| conserved inner membrane protein [Yersinia pestis Pestoides A], gi\|2... Y1529_YERPS - UPF0299 membrane protein YPTB1529 OS=Yersinia pseudotuberculosis serotype I (strain IP32953) GN=YPTB... Y3025_YERPG - UPF0299 membrane protein YpAngola_A3025 OS=Yersinia pestis bv. Antiqua (strain Angola) GN=YpAngola_A... gi\|115347266, gi... - gi\|218928655\|ref\|YP_002346530.1\| hypothetical protein YPO1514 [Yersinia pestis CO92], gi\|16121787\|re... Y2460_YERP3 - UPF0299 membrane protein YpsIP31758_2460 OS=Yersinia pseudotuberculosis serotype O:1b (strain IP 317... Y2559_YERPY - UPF0299 membrane protein YPK_2559 OS=Yersinia pseudotuberculosis serotype O:3 (strain YPIII) GN=YPK_... gi\|89105601, gi\|... - gi\|89105601\|ref\|ZP_01178117.1\| COG1380: Putative effector of murein hydrolase LrgA [Yersinia pestis ... gi\|167469197 - gi\|167469197\|ref\|ZP_02333901.1\| hypothetical protein YpesF_15214 [Yersinia pestis FV-1] Y809_YERPA - UPF0299 membrane protein YPA_0809 OS=Yersinia pestis bv. Antiqua (strain Antiqua) GN=YPA_0809 PE=3 S... Y2465_YERPN - UPF0299 membrane protein YPN_2465 OS=Yersinia pestis bv. Antiqua (strain Nepal516) GN=YPN_2465 PE=3 ... Y1639_YERPB - UPF0299 membrane protein YPTS_1639 OS=Yersinia pseudotuberculosis serotype IB (strain PB1/+) GN=YPTS... gi\|165991674, gi... - gi\|166009119\|ref\|ZP_02230017.1\| lrgA family protein [Yersinia pestis biovar Antiqua str. E1979001], ... gi\|149366435, gi... - gi\|149366435\|ref\|ZP_01888469.1\| putative membrane protein [Yersinia pestis CA88-4125], gi\|149290809\|... gi\|165923508, gi... - gi\|165924448\|ref\|ZP_02220280.1\| lrgA family protein [Yersinia pestis biovar Orientalis str. F1991016... Y1460_YERPP - UPF0299 membrane protein YPDSF_1460 OS=Yersinia pestis (strain Pestoides F) GN=YPDSF_1460 PE=3 SV=1 gi\|167050127, gi... - gi\|167400178\|ref\|ZP_02305691.1\| lrgA family protein [Yersinia pestis biovar Antiqua str. UG05-0454],... gi\|166211666, gi... - gi\|166211666\|ref\|ZP_02237701.1\| lrgA family protein [Yersinia pestis biovar Antiqua str. B42003004],... gi\|167424150, gi... - gi\|167424150\|ref\|ZP_02315903.1\| lrgA family protein [Yersinia pestis biovar Mediaevalis str. K197300... gi\|167421874, gi... - gi\|167421874\|ref\|ZP_02313627.1\| lrgA family protein [Yersinia pestis biovar Orientalis str. MG05-102...	120.0	[0..1]	[132..1]
gi\|77962480 - gi\|77962480\|ref\|ZP_00826300.1\| COG1380: Putative effector of murein hydrolase LrgA [Yersinia mollare...	120.0	[0..1]	[132..1]
gi\|26248521, gi\|... - gi\|26248521\|ref\|NP_754561.1\| hypothetical protein c2673 [Escherichia coli CFT073], gi\|26108926\|gb\|AA... gi\|24052575, gi\|... - ref\|NP_708041.1\| hypothetical protein SF2226 [Shigella flexneri 2a str. 301], gb\|AAN43748.1\| orf, c... gi\|226900972, gi... - gi\|237704606\|ref\|ZP_04535087.1\| conserved hypothetical protein [Escherichia sp. 3_2_53FAA], gi\|22690... gi\|91211427, gi\|... - gi\|91211427\|ref\|YP_541413.1\| hypothetical protein UTI89_C2414 [Escherichia coli UTI89], gi\|91073001\|...	116.0	[0..1]	[132..13]
gi\|83588122, gi\|... - gi\|83588122\|ref\|ZP_00926747.1\| COG1380: Putative effector of murein hydrolase LrgA [Escherichia coli... YOHJ_ECOHS - UPF0299 membrane protein YohJ OS=Escherichia coli O9:H4 (strain HS) GN=yohJ PE=3 SV=1 sp\|B7UFF7\|YOHJ_ECO27 - UPF0299 membrane protein yohJ OS=Escherichia coli O127:H6 (strain E2348/69 / EPEC) GN=yohJ PE=3 SV=1 YOHJ_ECOK1 - UPF0299 membrane protein YohJ OS=Escherichia coli O1:K1 / APEC GN=yohJ PE=3 SV=1 gi\|124526718, gi... - gi\|124526718\|ref\|ZP_01698627.1\| LrgA family protein [Escherichia coli B], gi\|124501774\|gb\|EAY49236.1... YOHJ_ECO45 - UPF0299 membrane protein YohJ OS=Escherichia coli O45:K1 (strain S88 / ExPEC) GN=yohJ PE=3 SV=1 YOHJ_ECO8A - UPF0299 membrane protein YohJ OS=Escherichia coli O8 (strain IAI1) GN=yohJ PE=3 SV=1 EG12023 - UPF0299 family inner membrane protein / UPF0299 family inner membrane protein, function unknown YOHJ_ECO55 - UPF0299 membrane protein YohJ OS=Escherichia coli (strain 55989 / EAEC) GN=yohJ PE=3 SV=1 YOHJ_SHIFL - UPF0299 membrane protein YohJ OS=Shigella flexneri GN=yohJ PE=3 SV=1 YOHJ_ECO81 - UPF0299 membrane protein YohJ OS=Escherichia coli O81 (strain ED1a) GN=yohJ PE=3 SV=1 YOHJ_ECOLU - UPF0299 membrane protein YohJ OS=Escherichia coli O17:K52:H18 (strain UMN026 / ExPEC) GN=yohJ PE=3 S... YOHJ_ECO7I - UPF0299 membrane protein YohJ OS=Escherichia coli O7:K1 (strain IAI39 / ExPEC) GN=yohJ PE=3 SV=1 YOHJ_ECOLI - UPF0299 membrane protein yohJ - Escherichia coli YOHJ_ECOL6 - UPF0299 membrane protein yohJ OS=Escherichia coli O6 GN=yohJ PE=3 SV=1 YOHJ_ECOSM - UPF0299 membrane protein YohJ OS=Escherichia coli (strain SMS-3-5 / SECEC) GN=yohJ PE=3 SV=1 YOHJ_ECODH - UPF0299 membrane protein YohJ OS=Escherichia coli (strain K12 / DH10B) GN=yohJ PE=3 SV=1 YOHJ_ECO27 - UPF0299 membrane protein YohJ OS=Escherichia coli O127:H6 (strain E2348/69 / EPEC) GN=yohJ PE=3 SV=1 YOHJ_ECOSE - UPF0299 membrane protein YohJ OS=Escherichia coli (strain SE11) GN=yohJ PE=3 SV=1 YOHJ_ECOL6 - UPF0299 membrane protein YohJ OS=Escherichia coli O6:H1 (strain CFT073 / ATCC 700928 / UPEC) GN=yohJ... gi\|30063585, gi\|... - gi\|30063585\|ref\|NP_837756.1\| hypothetical protein S2355 [Shigella flexneri 2a str. 2457T], gi\|300418... EG12023 - UPF0299 family inner membrane protein / UPF0299 family inner membrane protein, function unknown gi\|56480051, gi\|... - gi\|56480051\|ref\|NP_708041.2\| hypothetical protein SF2226 [Shigella flexneri 2a str. 301], gi\|5638360... YOHJ_ECOL5 - UPF0299 membrane protein YohJ OS=Escherichia coli O6:K15:H31 (strain 536 / UPEC) GN=yohJ PE=3 SV=1 gi\|190909774, gi... - gi\|75242958\|ref\|ZP_00726664.1\| COG1380: Putative effector of murein hydrolase LrgA [Escherichia coli... gi\|75259613, gi\|... - gi\|75259613\|ref\|ZP_00730915.1\| COG1380: Putative effector of murein hydrolase LrgA [Escherichia coli... gi\|194414820, gi... - gi\|75211557\|ref\|ZP_00711636.1\| COG1380: Putative effector of murein hydrolase LrgA [Escherichia coli... gi\|191165375, gi... - gi\|75231520\|ref\|ZP_00717889.1\| COG1380: Putative effector of murein hydrolase LrgA [Escherichia coli... gi\|227887196, gi... - gi\|227887196\|ref\|ZP_04005001.1\| murein hydrolase regulator LrgA [Escherichia coli 83972], gi\|2278355... YOHJ_SHIBS - UPF0299 membrane protein YohJ OS=Shigella boydii serotype 4 (strain Sb227) GN=yohJ PE=3 SV=1 YOHJ_ECOLC - UPF0299 membrane protein YohJ OS=Escherichia coli (strain ATCC 8739 / DSM 1576 / Crooks) GN=yohJ PE=... YOHJ_ECOBW - UPF0299 membrane protein YohJ OS=Escherichia coli (strain K12 / MC4100 / BW2952) GN=yohJ PE=3 SV=1 gi\|89108958, gi\|... - gi\|89108958\|ref\|AP_002738.1\| conserved inner membrane protein [Escherichia coli str. K-12 substr. W3... gi\|242377783, gi... - gi\|251785510\|ref\|YP_002999814.1\| hypothetical protein B21_02029 [Escherichia coli BL21], gi\|24237778... gi\|188491706, gi... - gi\|75514520\|ref\|ZP_00736798.1\| COG1380: Putative effector of murein hydrolase LrgA [Escherichia coli... gi\|253772932, gi... - gi\|254288917\|ref\|YP_003054665.1\| hypothetical protein ECD_02070 [Escherichia coli BL21(DE3)], gi\|253... YOHJ_SHISS - UPF0299 membrane protein YohJ OS=Shigella sonnei (strain Ss046) GN=yohJ PE=3 SV=1 gi\|253974056, gi... - gi\|254162155\|ref\|YP_003045263.1\| hypothetical protein ECB_02070 [Escherichia coli B str. REL606], gi...	115.0	[0..1]	[132..1]
gi\|194431391, gi... - gi\|83571127\|ref\|ZP_00922568.1\| COG1380: Putative effector of murein hydrolase LrgA [Shigella dysente...	115.0	[0..1]	[132..1]

Back

Predicted Domain #1

Region A:
Residues: [1-132]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSKTLNIIWQ YLRAFVLIYA CLYAGIFIAS LLPVTIPGSI IGMLILFVLL ALQILPAKWV  60
   61 NPGCYVLIRY MALLFVPIGV GVMQYFDLLR AQFGPVVVSC AISTLVVFLV VSWSSQLVHG 120
  121 ERKVVGQKGS EE

[Run NCBI BLAST on this sequence.]

Detection Method:	Pfam
Confidence:	55.823909
Match:	PF03788.5
Description:	No description for PF03788.5 was found.

Shown below are all of our structure predictions for this domain.
Click here to view only most confident match.

Found no structure predictions for this domain.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits