YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|89107879, gi\|...
Organism:	Escherichia coli str. K-12 substr. W3110
Length:	245 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|89107879, gi|....

Description	E-value	Query Range	Subject Range
gi\|21959124, gi\|... - gi\|22126161\|ref\|NP_669584.1\| putative hydrolase [Yersinia pestis KIM], gi\|21959124\|gb\|AAM85835.1\|AE0...	192.0	[0..1]	[245..38]
gi\|238728195, gi... - gi\|77979768\|ref\|ZP_00835184.1\| COG1387: Histidinol phosphatase and related hydrolases of the PHP fam...	191.0	[0..1]	[245..1]
Y2686_SHESR - Probable phosphatase Shewmr7_2686 OS=Shewanella sp. (strain MR-7) GN=Shewmr7_2686 PE=3 SV=1	190.0	[0..4]	[245..5]
Y1420_SHELP - Probable phosphatase Shew_1420 OS=Shewanella loihica (strain ATCC BAA-1088 / PV-4) GN=Shew_1420 PE=3...	189.0	[0..1]	[245..1]
gi\|242231978, gi... - gi\|242256489\|ref\|ZP_04801379.1\| PHP domain protein [Thermoanaerobacter sp. X513], gi\|242231978\|gb\|EE... Y1060_THEPX - Probable phosphatase Teth514_1060 OS=Thermoanaerobacter sp. (strain X514) GN=Teth514_1060 PE=3 SV=1 gi\|241884330, gi... - gi\|241903264\|ref\|ZP_04787990.1\| PHP domain protein [Thermoanaerobacter brockii subsp. finnii Ako-1]... Y577_THEP3 - Probable phosphatase Teth39_0577 OS=Thermoanaerobacter pseudethanolicus (strain ATCC 33223 / 39E) GN...	188.0	[0..1]	[241..1]
Y2446_YERPG - Probable phosphatase YpAngola_A2446 OS=Yersinia pestis bv. Antiqua (strain Angola) GN=YpAngola_A2446...	188.0	[0..1]	[245..1]
gi\|90310136, gi\|... - gi\|90408756\|ref\|ZP_01216902.1\| hypothetical protein PCNPT3_08415 [Psychromonas sp. CNPT3], gi\|903101...	187.0	[0..1]	[245..1]
gi\|166207676, gi... - gi\|166210496\|ref\|ZP_02236531.1\| putative phosphoesterase [Yersinia pestis biovar Antiqua str. B42003... gi\|167401369, gi... - gi\|167401369\|ref\|ZP_02306866.1\| putative phosphoesterase [Yersinia pestis biovar Antiqua str. UG05-0... gi\|45441683, gi\|... - gi\|45441683\|ref\|NP_993222.1\| putative hydrolase [Yersinia pestis biovar Microtus str. 91001], gi\|454... gi\|166961860, gi... - gi\|167420165\|ref\|ZP_02311918.1\| putative phosphoesterase [Yersinia pestis biovar Orientalis str. MG0... gi\|229898094, gi... - gi\|229898094\|ref\|ZP_04513243.1\| predicted zinc-binding hydrolase [Yersinia pestis biovar Orientalis ... Y2037_YERPE - Probable phosphatase YPO2037/y2275/YP_1880 OS=Yersinia pestis GN=YPO2037 PE=3 SV=1 gi\|167056295, gi... - gi\|167424413\|ref\|ZP_02316166.1\| putative phosphoesterase [Yersinia pestis biovar Mediaevalis str. K1... gi\|229897447, gi... - gi\|229897447\|ref\|ZP_04512603.1\| predicted zinc-binding hydrolase [Yersinia pestis biovar Orientalis ... gi\|16122276, gi\|... - gi\|218929144\|ref\|YP_002347019.1\| putative hydrolase [Yersinia pestis CO92], gi\|16122276\|ref\|NP_40558... Y2165_YERPY - Probable phosphatase YPK_2165 OS=Yersinia pseudotuberculosis serotype O:3 (strain YPIII) GN=YPK_2165... gi\|229894743, gi... - gi\|229894743\|ref\|ZP_04509923.1\| predicted zinc-binding hydrolase [Yersinia pestis Pestoides A], gi\|2... Y2019_YERPS - Probable phosphatase YPTB2019 OS=Yersinia pseudotuberculosis serotype I (strain IP32953) GN=YPTB2019... Y2077_YERPB - Probable phosphatase YPTS_2077 OS=Yersinia pseudotuberculosis serotype IB (strain PB1/+) GN=YPTS_207... gi\|165921605, gi... - gi\|165926384\|ref\|ZP_02222216.1\| putative phosphoesterase [Yersinia pestis biovar Orientalis str. F19... gi\|166009251, gi... - gi\|166009251\|ref\|ZP_02230149.1\| putative phosphoesterase [Yersinia pestis biovar Antiqua str. E19790... Y2053_YERP3 - Probable phosphatase YpsIP31758_2053 OS=Yersinia pseudotuberculosis serotype O:1b (strain IP 31758) ... Y2019_YERPS - Probable phosphatase YPTB2019 OS=Yersinia pseudotuberculosis GN=YPTB2019 PE=3 SV=1 Y1419_YERPA - Probable phosphatase YPA_1419 OS=Yersinia pestis bv. Antiqua (strain Antiqua) GN=YPA_1419 PE=3 SV=1 gi\|149366034, gi... - gi\|149366034\|ref\|ZP_01888069.1\| putative hydrolase [Yersinia pestis CA88-4125], gi\|149292447\|gb\|EDM4... Y1514_YERPN - Probable phosphatase YPN_1514 OS=Yersinia pestis bv. Antiqua (strain Nepal516) GN=YPN_1514 PE=3 SV=1 Y1086_YERPP - Probable phosphatase YPDSF_1086 OS=Yersinia pestis (strain Pestoides F) GN=YPDSF_1086 PE=3 SV=1 gi\|89104305, gi\|... - gi\|89104305\|ref\|ZP_01176852.1\| COG1387: Histidinol phosphatase and related hydrolases of the PHP fam...	187.0	[0..1]	[245..1]
gi\|238715871, gi... - gi\|77959370\|ref\|ZP_00823390.1\| COG1387: Histidinol phosphatase and related hydrolases of the PHP fam...	187.0	[0..1]	[245..1]
Y3709_SHEFN - Probable phosphatase Sfri_3709 OS=Shewanella frigidimarina (strain NCIMB 400) GN=Sfri_3709 PE=3 SV=1	186.0	[0..1]	[245..1]

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Predicted Domain #1

Region A:
Residues: [1-245]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MYPVDLHMHT VASTHAYSTL SDYIAQAKQK GIKLFAITDH GPDMEDAPHH WHFINMRIWP  60
   61 RVVDGVGILR GIEANIKNVD GEIDCSGKMF DSLDLIIAGF HEPVFAPHDK ATNTQAMIAT 120
  121 IASGNVHIIS HPGNPKYEID VKAVAEAAAK HQVALEINNS SFLHSRKGSE DNCREVAAAV 180
  181 RDAGGWVALG SDSHTAFTMG EFEECLKILD AVDFPPERIL NVSPRRLLNF LESRGMAPIA 240
  241 EFADL

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	48.0
Match:	1m65A
Description:	Hypothetical protein YcdX
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits