YRC Public Data Repository - Protein Structure Prediction

Protein:	RPAB2_SCHPO
Organism:	Schizosaccharomyces pombe 972h-
Length:	142 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for RPAB2_SCHPO.

Description	E-value	Query Range	Subject Range
gi\|71020411, gi\|... - gi\|71020411\|ref\|XP_760436.1\| hypothetical protein UM04289.1 [Ustilago maydis 521], ref\|XP_401904.1\| ...	184.0	[0..1]	[142..1]
gi\|190408109 - gi\|190408109\|gb\|EDV11374.1\| RNA polymerases I [Saccharomyces cerevisiae RM11-1a] RPO26 - RNA polymerase subunit ABC23, common to RNA polymerases I, II, and III; part of central core; simila... RPAB2_YEAST - DNA-directed RNA polymerases I, II, and III subunit RPABC2 OS=Saccharomyces cerevisiae (strain ATCC ... gi\|151942957 - gi\|151942957\|gb\|EDN61303.1\| ABC23 [Saccharomyces cerevisiae YJM789]	170.0	[0..1]	[142..1]
orf19.2643, orf1... - orf19.2643 CGDID:CAL0003456 Assembly 19, Contig19-10155 (15691, 15218) CDS, reverse complemented, tr... gi\|238882727 - gi\|238882727\|gb\|EEQ46365.1\| DNA-directed RNA polymerases I [Candida albicans WO-1] gi\|46433385, gi\|... - gi\|68488216\|ref\|XP_712026.1\| potential subunit common to RNA polymerase I, II and III [Candida albic...	162.0	[0..1]	[142..1]
gi\|44983223, gi\|... - gi\|45190327\|ref\|NP_984581.1\| AEL279Cp [Ashbya gossypii ATCC 10895], gi\|44983223\|gb\|AAS52405.1\| AEL27... gi\|44983223 - gi\|44983223\|gb\|AAS52405.1\| AEL279Cp [Ashbya gossypii ATCC 10895]	160.0	[0..1]	[142..1]
gi\|56759040 - gi\|56759040\|gb\|AAW27660.1\| SJCHGC05009 protein [Schistosoma japonicum]	159.0	[0..7]	[142..3]
gi\|38106302, gi\|... - gi\|39939838\|ref\|XP_359456.1\| hypothetical protein MGG_05321 [Magnaporthe grisea 70-15], gb\|EAA52629....	159.0	[0..4]	[142..16]
gi\|49526105 - gi\|49526105\|emb\|CAG59724.1\| unnamed protein product [Candida glabrata] gi\|50288735, gi\|... - gi\|50288735\|ref\|XP_446797.1\| unnamed protein product [Candida glabrata], gi\|49526105\|emb\|CAG59724.1\|...	156.0	[0..1]	[142..1]
gi\|70990832, gi\|... - gi\|70990832\|ref\|XP_750265.1\| DNA-directed RNA polymerase I, II, and III subunit Rpb6 [Aspergillus fu...	156.0	[0..1]	[142..1]
gi\|49640821, gi\|... - gi\|50303495\|ref\|XP_451689.1\| unnamed protein product [Kluyveromyces lactis], gi\|49640821\|emb\|CAH0208... gi\|49640821 - gi\|49640821\|emb\|CAH02082.1\| KLLA0B03476p [Kluyveromyces lactis]	155.0	[0..1]	[142..1]
gi\|67524579, gi\|... - gi\|67524579\|ref\|XP_660351.1\| hypothetical protein AN2747.2 [Aspergillus nidulans FGSC A4], ref\|XP_40...	155.0	[0..1]	[132..1]

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Predicted Domain #1

Region A:
Residues: [1-142]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSDYEEDEAF GMDGAVMEEE VDELEMIDEN GQSQQGVSHP GEPSTTVITE DVASSKTAQS  60
   61 GKAVAKEDRT TTPYMTKYER ARILGTRALQ ISMNAPVLVD LEGETDPLQI AMKELAQKKI 120
  121 PLLVRRYLPD GSYEDWSVAE LI

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	43.0
Match:	1i3qF
Description:	RPB6
Matching Structure (courtesy of the PDB):

Predicted functions:

Term	Confidence	Notes
DNA-directed RNA polymerase activity	8.95763217796707	bayes_pls_golite062009
RNA polymerase activity	8.95763217796707	bayes_pls_golite062009
nucleotidyltransferase activity	6.40098308297479	bayes_pls_golite062009
transferase activity, transferring phosphorus-containing groups	4.33401073482737	bayes_pls_golite062009
transferase activity	3.84777794959854	bayes_pls_golite062009
binding	2.4602171483686	bayes_pls_golite062009
DNA binding	1.9558633290744	bayes_pls_golite062009
nucleic acid binding	1.91068858292286	bayes_pls_golite062009
catalytic activity	0.902495165806215	bayes_pls_golite062009

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: