YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|107102753
Organism:	Pseudomonas aeruginosa PACS2
Length:	213 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|107102753.

Description	E-value	Query Range	Subject Range
gi\|49078750 - gi\|49078750\|gb\|AAT49816.1\| PA3223 [synthetic construct]	2.0E-49	[1..213]	[1..213]
gi\|46164107, gi\|... - gi\|46164107\|ref\|ZP_00136572.2\| COG1182: Acyl carrier protein phosphodiesterase [Pseudomonas aerugino...	3.0E-49	[1..213]	[1..213]
gi\|126168116, gi... - gi\|84320050\|ref\|ZP_00968436.1\| COG1182: Acyl carrier protein phosphodiesterase [Pseudomonas aerugino...	5.0E-49	[1..213]	[1..213]
gi\|152988760, gi... - gi\|94414400\|ref\|ZP_01294261.1\| hypothetical protein PaerP_01003834 [Pseudomonas aeruginosa PA7], gi\|...	1.0E-48	[1..213]	[1..213]
AZOR2_PSEPF - FMN-dependent NADH-azoreductase 2 OS=Pseudomonas fluorescens (strain Pf0-1) GN=azoR2 PE=3 SV=1	2.0E-46	[1..199]	[1..199]
AZOR2_PSEF5 - FMN-dependent NADH-azoreductase 2 OS=Pseudomonas fluorescens (strain Pf-5 / ATCC BAA-477) GN=azoR2 P...	4.0E-46	[1..199]	[1..199]
AZOR_AZOVD - FMN-dependent NADH-azoreductase OS=Azotobacter vinelandii (strain DJ / ATCC BAA-1303) GN=azoR PE=3 S... gi\|23102364, gi\|... - gi\|67158481\|ref\|ZP_00419426.1\| [Acyl-carrier protein] phosphodiesterase [Azotobacter vinelandii AvOP...	6.0E-46	[1..199]	[1..199]
gi\|95111939 - gi\|95111939\|emb\|CAK16664.1\| putative acyl carrier protein phosphodiesterase [Pseudomonas entomophila... gi\|104782952, gi... - gi\|95111939\|emb\|CAK16664.1\| putative acyl carrier protein phosphodiesterase [Pseudomonas entomophila...	2.0E-45	[1..199]	[1..199]
AZOR_PECAS - FMN-dependent NADH-azoreductase OS=Pectobacterium atrosepticum (strain SCRI 1043 / ATCC BAA-672) GN=... AZOR_ERWCT - FMN-dependent NADH-azoreductase OS=Erwinia carotovora subsp. atroseptica GN=azoR PE=3 SV=3	2.0E-45	[1..199]	[1..199]
tr\|I7AVP8\|I7AVP8... - FMN-dependent NADH-azoreductase OS=Pseudomonas putida (strain DOT-T1E) GN=azoR PE=3 SV=1 AZOR2_PSEPK - FMN-dependent NADH-azoreductase 2 OS=Pseudomonas putida (strain KT2440) GN=azoR2 PE=3 SV=1	4.0E-45	[1..199]	[1..199]

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Predicted Domain #1

Region A:
Residues: [1-213]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSRVLVIESS ARQRGSVSRL LTAEFISHWK IAHPADRFQV RDLAREPLPH LDELLLGAWT  60
   61 TPCDGHSAAE RRALERSNRL TEELRMADVL VLAAPMYNFA IPSSLKSWFD HVLRAGLTFR 120
  121 YAEQGPEGLL QGKRAFVLTA RGGIYAGGGL DHQEPYLRQV LGFVGIHDVT FIHAEGMNMG 180
  181 PEFREKGLAR ARERMRQALE TDTSLCVPLP TLR

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	45.09691
Match:	1tikA
Description:	CRYSTAL STRUCTURE OF ACYL CARRIER PROTEIN PHOSPHODIESTERASE
Matching Structure (courtesy of the PDB):

Predicted functions:

Term	Confidence	Notes
catalytic activity	0.275631658558537	bayes_pls_golite062009

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: