YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|107103515
Organism:	Pseudomonas aeruginosa PACS2
Length:	342 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|107103515.

Description	E-value	Query Range	Subject Range
gi\|152989135, gi... - gi\|94417067\|ref\|ZP_01296889.1\| hypothetical protein PaerP_01001263 [Pseudomonas aeruginosa PA7], gi\|...	2.0E-78	[1..342]	[1..342]
gi\|116052038, gi... - gi\|46164609\|ref\|ZP_00205119.1\| COG0797: Lipoproteins [Pseudomonas aeruginosa UCBPP-PA14], gi\|1160520...	8.0E-76	[1..342]	[1..341]
gi\|24986563, gi\|... - gi\|26991484\|ref\|NP_746909.1\| rare lipoprotein A family [Pseudomonas putida KT2440], gi\|24986563\|gb\|A... tr\|I7CCA9\|I7CCA9... - Rare lipoprotein A family OS=Pseudomonas putida (strain DOT-T1E) GN=rlpA PE=3 SV=1	7.0E-65	[4..342]	[2..333]
gi\|82714721, gi\|... - gi\|82738225\|ref\|ZP_00901062.1\| Rare lipoprotein A [Pseudomonas putida F1], gi\|82714721\|gb\|EAP49798.1...	8.0E-65	[4..342]	[2..333]
gi\|71736614, gi\|... - gi\|71736614\|ref\|YP_276520.1\| RlpA family lipoprotein [Pseudomonas syringae pv. phaseolicola 1448A], ...	8.0E-64	[4..342]	[2..341]
gi\|66047589, gi\|... - gi\|66047589\|ref\|YP_237430.1\| rare lipoprotein A [Pseudomonas syringae pv. syringae B728a], gi\|632582...	3.0E-63	[4..342]	[2..341]
tr\|Q87VW3\|Q87VW3... - Lipoprotein, rlpA family OS=Pseudomonas syringae pv. tomato (strain DC3000) GN=PSPTO_4822 PE=3 SV=1 gi\|28855190, gi\|... - gi\|28871937\|ref\|NP_794556.1\| RlpA family lipoprotein [Pseudomonas syringae pv. tomato str. DC3000], ... gi\|213927386, gi... - gi\|213968043\|ref\|ZP_03396189.1\| lipoprotein, rlpA family [Pseudomonas syringae pv. tomato T1], gi\|21...	6.0E-63	[4..342]	[2..341]
gi\|104783764, gi... - gi\|95112751\|emb\|CAK17479.1\| putative lipoprotein, rare lipoprotein A family [Pseudomonas entomophila... gi\|95112751 - gi\|95112751\|emb\|CAK17479.1\| putative lipoprotein, rare lipoprotein A family [Pseudomonas entomophila...	2.0E-62	[13..340]	[11..331]
gi\|70732754, gi\|... - gi\|70732754\|ref\|YP_262517.1\| RlpA family lipoprotein [Pseudomonas fluorescens Pf-5], gi\|68347053\|gb\|...	8.0E-62	[5..342]	[3..332]
gi\|67154143, gi\|... - gi\|67154143\|ref\|ZP_00415888.1\| Rare lipoprotein A [Azotobacter vinelandii AvOP], gi\|67088276\|gb\|EAM0... gi\|67154143 - gi\|67154143\|ref\|ZP_00415888.1\| Rare lipoprotein A [Azotobacter vinelandii AvOP]	1.0E-59	[26..342]	[22..325]

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Predicted Domain #1

Region A:
Residues: [1-91]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSKRVRSSLI LPAVCGLGLA AVLLSSCSSK APQQPARQAG ISGPGDYSRP HRDGAPWWDV  60
   61 DVSRIPDAVP MPHNGSVKAN PYTVLGKTYY P

[Run NCBI BLAST on this sequence.]

Detection Method:

deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #2

Region A:
Residues: [92-197]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MNDARAYRMV GTASWYGTKF HGQATANGET YDLYGMTAAH KTLPLPSYVR VTNLDNGKSV  60
   61 IVRVNDRGPF YSDRVIDLSF AAAKKLGYAE TGTARVKVEG IDPVQW

[Run NCBI BLAST on this sequence.]

Detection Method:	FFAS03
Confidence:	3.97
Match:	2bh0A
Description:	No description for 2bh0A was found.

Predicted Domain #3

Region A:
Residues: [198-342]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 WAQRGRPAPM VLAQPKQAVA QAAPAAAQTQ AVAMAQPIET YTPPPAQHAA AVLPVQIDSK  60
   61 KNASLPADGL YLQVGAFANP DAAELLKAKL SGVTAAPVFI SSVVRNQQIL HRVRLGPIGS 120
  121 ADEVSRTQDS IRVANLGQPT LVRPD

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	12.221849
Match:	1utaA
Description:	Solution structure of the C-terminal RNP domain from the divisome protein FtsN
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits