YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|107104143
Organism:	Pseudomonas aeruginosa PACS2
Length:	198 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|107104143.

Description	E-value	Query Range	Subject Range
gi\|53726588, gi\|... - gi\|53726588\|ref\|ZP_00347627.1\| COG3166: Tfp pilus assembly protein PilN [Pseudomonas aeruginosa UCBP...	4.0E-48	[1..198]	[1..198]
gi\|84317710, gi\|... - gi\|84317710\|ref\|ZP_00966148.1\| COG3166: Tfp pilus assembly protein PilN [Pseudomonas aeruginosa C371...	1.0E-47	[1..198]	[1..198]
gi\|94415414, gi\|... - gi\|94415414\|ref\|ZP_01295255.1\| hypothetical protein PaerP_01002782 [Pseudomonas aeruginosa PA7], gi\|...	9.0E-47	[1..198]	[1..198]
gi\|182682305, gi... - gi\|182682305\|ref\|YP_001830465.1\| fimbrial assembly family protein [Xylella fastidiosa M23], gi\|18263... gi\|28199569, gi\|... - gi\|28199569\|ref\|NP_779883.1\| fimbrial assembly membrane protein [Xylella fastidiosa Temecula1], gi\|2...	3.0E-42	[1..187]	[1..193]
gi\|83636656, gi\|... - gi\|83648613\|ref\|YP_437048.1\| Tfp pilus assembly protein PilN [Hahella chejuensis KCTC 2396], gi\|8363...	4.0E-42	[1..188]	[1..186]
gi\|15836972, gi\|... - gi\|9105200\|gb\|AAF83180.1\|AE003888_13 fimbrial assembly membrane protein [Xylella fastidiosa 9a5c], g... gi\|11282614 - pir\|\|A82816 fimbrial assembly membrane protein XF0370 [imported] - Xylella fastidiosa (strain 9a5c)	5.0E-42	[1..196]	[1..211]
gi\|71900201, gi\|... - gi\|71900201\|ref\|ZP_00682340.1\| Fimbrial assembly [Xylella fastidiosa Ann-1], gi\|71730034\|gb\|EAO32126...	5.0E-42	[1..185]	[1..191]
gi\|113972029, gi... - gi\|82497274\|ref\|ZP_00882831.1\| type IV pilus biogenesis protein PilN [Shewanella sp. MR-4], gi\|82404...	6.0E-42	[1..195]	[1..194]
gi\|71729133, gi\|... - gi\|71901090\|ref\|ZP_00683198.1\| Fimbrial assembly [Xylella fastidiosa Ann-1], gi\|71729133\|gb\|EAO31256... gi\|167965733, gi... - gi\|170730940\|ref\|YP_001776373.1\| fimbrial assembly membrane protein [Xylella fastidiosa M12], gi\|167... gi\|71276557, gi\|... - gi\|71276557\|ref\|ZP_00652831.1\| Fimbrial assembly [Xylella fastidiosa Dixon], gi\|71162628\|gb\|EAO12356...	7.0E-42	[1..185]	[1..191]
gi\|88811947, gi\|... - gi\|88811947\|ref\|ZP_01127200.1\| fimbrial assembly membrane protein [Nitrococcus mobilis Nb-231], gi\|8...	1.0E-41	[2..191]	[3..191]

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Predicted Domain #1

Region A:
Residues: [1-198]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MARINLLPWR EELREQRKQQ FLVILGGVLV ASAALVFLGD QYFTAAIENQ NARNDFLRKE  60
   61 IVVLDARIKE ISELKSRRQQ LLERMKIIQD LQGNRPIIGR VFDQLVRTLP DGVYFTDLKM 120
  121 TGKNIAIAGA AESNNRVSNL MRNMDASEWL TAPTLNEVKA VTQGAVDQAN VFQLTVQQTQ 180
  181 PGEEDAKAKH GVAQGAKK

[Run NCBI BLAST on this sequence.]

Detection Method:	Pfam
Confidence:	86.721246
Match:	PF05137.4
Description:	No description for PF05137.4 was found.

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits