YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|107100529
Organism:	Pseudomonas aeruginosa PACS2
Length:	369 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|107100529.

Description	E-value	Query Range	Subject Range
gi\|95111825 - gi\|95111825\|emb\|CAK16549.1\| flagellar basal P-ring protein [Pseudomonas entomophila L48] FLGI_PSEE4 - Flagellar P-ring protein OS=Pseudomonas entomophila (strain L48) GN=flgI PE=3 SV=1	0.0	[1..369]	[1..369]
tr\|E4RB16\|E4RB16... - Flagellar P-ring protein OS=Pseudomonas putida (strain BIRD-1) GN=flgI PE=3 SV=1 gi\|148510769, gi... - gi\|148546711\|ref\|YP_001266813.1\| flagellar basal body P-ring protein [Pseudomonas putida F1], gi\|148... tr\|I7C516\|I7C516... - Flagellar P-ring protein OS=Pseudomonas putida (strain DOT-T1E) GN=flgI PE=3 SV=1 FLGI_PSEPK - Flagellar P-ring protein OS=Pseudomonas putida (strain KT2440) GN=flgI PE=3 SV=1	0.0	[1..369]	[1..369]
gi\|82715212, gi\|... - gi\|82737694\|ref\|ZP_00900540.1\| flagellar P-ring protein precursor FlgI [Pseudomonas putida F1], gi\|8...	0.0	[1..369]	[3..371]
gi\|94415942 - gi\|94415942\|ref\|ZP_01295774.1\| hypothetical protein PaerP_01002271 [Pseudomonas aeruginosa PA7]	0.0	[1..369]	[4..372]
gi\|49086284 - gi\|49086284\|gb\|AAT51341.1\| PA1084 [synthetic construct]	0.0	[1..369]	[1..369]
gi\|213967577, gi... - gi\|213967577\|ref\|ZP_03395725.1\| flagellar P-ring protein FlgI [Pseudomonas syringae pv. tomato T1], ... FLGI_PSESM - Flagellar P-ring protein OS=Pseudomonas syringae pv. tomato GN=flgI PE=3 SV=1 FLGI_PSESM - Flagellar P-ring protein OS=Pseudomonas syringae pv. tomato (strain DC3000) GN=flgI PE=3 SV=1	0.0	[1..369]	[1..369]
FLGI_PSEU2 - Flagellar P-ring protein OS=Pseudomonas syringae pv. syringae (strain B728a) GN=flgI PE=3 SV=1	0.0	[1..369]	[1..369]
FLGI_PSE14 - Flagellar P-ring protein OS=Pseudomonas savastanoi pv. phaseolicola (strain 1448A / Race 6) GN=flgI ... gi\|49205096 - gi\|49205096\|dbj\|BAC75960.2\| flagellar P-ring protein FlgI [Pseudomonas syringae pv. tabaci]	0.0	[1..369]	[1..369]
FLGI_PSEPF - Flagellar P-ring protein OS=Pseudomonas fluorescens (strain Pf0-1) GN=flgI PE=3 SV=1	0.0	[20..369]	[13..362]
FLGI_PSEF5 - Flagellar P-ring protein OS=Pseudomonas fluorescens (strain Pf-5 / ATCC BAA-477) GN=flgI PE=3 SV=1	0.0	[9..369]	[2..362]

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Predicted Domain #1

Region A:
Residues: [1-182]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MTKFKHLLAL AALLLAAGAA QAERLKDIAS IQGVRTNQLI GYGLVVGLSG SGDQTTQTPF  60
   61 TLQTFNNMLA QFGIKVPANV GNVQLKNVAA VSVHADLPPF AKPGQPIDVT VSSIGNAKSL 120
  121 RGGSLLMTPL KGIDGQVYAV AQGNLVVGGF DAEGRDGSKI TVNVPSAGRI PAGATVERAV 180
  181 PS

[Run NCBI BLAST on this sequence.]

Detection Method:

deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #2

Region A:
Residues: [183-251]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 GFDQGNSLTL NLNRPDFTTA KRIVDRINEL LGPGVAHAVD GGSVRVSAPL DPNQRVDYLS  60
   61 ILENLDVQP

[Run NCBI BLAST on this sequence.]

Detection Method:

MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #3

Region A:
Residues: [252-369]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 GEAVAKVIIN SRTGTIVIGQ NVKVSPAAVT HGSLTVSITE DPIVSQPGAF SNGQTAVVPR  60
   61 SRVNAEEETK PMFKFGPGTT LDDIVRAVNQ VGAAPSDLMA ILEALKQAGA LQADLIVI

[Run NCBI BLAST on this sequence.]

Detection Method:

MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits