YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|107100910
Organism:	Pseudomonas aeruginosa PACS2
Length:	252 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

[What does the above image mean?]

[Show Ginzu Version Information]

Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|107100910.

Description	E-value	Query Range	Subject Range
gi\|77457806, gi\|... - gi\|77457806\|ref\|YP_347311.1\| cytochrome c-type biogenesis protein CcmC [Pseudomonas fluorescens Pf0-...	8.0E-52	[2..252]	[1..251]
gi\|49082260 - gi\|49082260\|gb\|AAT50530.1\| PA1477 [synthetic construct]	1.0E-51	[1..252]	[1..252]
gi\|68343371, gi\|... - gi\|70729072\|ref\|YP_258808.1\| heme exporter protein CcmC [Pseudomonas fluorescens Pf-5], gi\|68343371\|...	1.0E-51	[2..252]	[1..251]
gi\|150963515, gi... - gi\|94415043\|ref\|ZP_01294892.1\| hypothetical protein PaerP_01003151 [Pseudomonas aeruginosa PA7], gi\|...	1.0E-51	[1..252]	[1..252]
gi\|95111772 - gi\|95111772\|emb\|CAK16496.1\| cytochrome c-type biogenesis protein CcmC; heme ABC export system, perme... gi\|104782785, gi... - gi\|95111772\|emb\|CAK16496.1\| cytochrome c-type biogenesis protein CcmC; heme ABC export system, perme...	4.0E-51	[2..249]	[3..250]
gi\|23472660, gi\|... - gi\|66046620\|ref\|YP_236461.1\| cytochrome c-type biogenesis protein CcmC [Pseudomonas syringae pv. syr...	1.0E-50	[3..249]	[11..257]
gi\|71554649, gi\|... - gi\|71734096\|ref\|YP_275471.1\| heme exporter protein CcmC [Pseudomonas syringae pv. phaseolicola 1448A...	7.0E-50	[3..249]	[6..252]
gi\|67088783, gi\|... - gi\|67154650\|ref\|ZP_00416395.1\| Cytochrome c-type biogenesis protein CcmC [Azotobacter vinelandii AvO... gi\|67154650, gi\|... - gi\|67154650\|ref\|ZP_00416395.1\| Cytochrome c-type biogenesis protein CcmC [Azotobacter vinelandii AvO...	8.0E-50	[2..250]	[1..249]
tr\|I7C4C5\|I7C4C5... - Heme exporter protein CcmC OS=Pseudomonas putida (strain DOT-T1E) GN=ccmC PE=4 SV=1 gi\|148510839, gi... - gi\|82739641\|ref\|ZP_00902436.1\| Cytochrome c-type biogenesis protein CcmC [Pseudomonas putida F1], gi...	1.0E-49	[4..249]	[5..250]

Back

Predicted Domain #1

Region A:
Residues: [1-252]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MMNWTWFHKL GSPKWFYEIS GRWLPWFAVA AALLIVTGCV WGLAFAPPDY QQGNSFRIIY  60
   61 IHVPAAFLAQ SCYVMLAVAG AVGLIWKMKI ADVAVQCAAP IGAWMTFVAL LTGAVWGKPT 120
  121 WGAWWVWDAR LTAMLILLFL YFGIIALGQA ISNRDSAAKA CAVLAIVGVV NIPIIKYSVE 180
  181 WWNTLHQPAT FTITEKPAMP VEMWLPLLIM VLGFYCFFAA MLLVRMRLEV LKRESRTAWA 240
  241 KAEVKALVEK AR

[Run NCBI BLAST on this sequence.]

Detection Method:	Pfam
Confidence:	39.481486
Match:	PF01578.11
Description:	No description for PF01578.11 was found.

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits