YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|107104417
Organism:	Pseudomonas aeruginosa PACS2
Length:	120 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|107104417.

Description	E-value	Query Range	Subject Range
gi\|71734044, gi\|... - gi\|71734044\|ref\|YP_272519.1\| transcriptional regulator [Pseudomonas syringae pv. phaseolicola 1448A]...	1.0E-39	[1..120]	[1..120]
gi\|152986350, gi... - gi\|94417800\|ref\|ZP_01297617.1\| hypothetical protein PaerP_01000582 [Pseudomonas aeruginosa PA7], gi\|...	1.0E-39	[1..120]	[1..120]
gi\|63254203, gi\|... - gi\|66043496\|ref\|YP_233337.1\| hypothetical protein Psyr_0226 [Pseudomonas syringae pv. syringae B728a...	2.0E-39	[1..120]	[1..120]
gi\|49074010 - gi\|49074010\|gb\|AAT49373.1\| PA5314 [synthetic construct]	2.0E-39	[1..120]	[1..120]
gi\|44662936 - gi\|44662936\|gb\|AAS47554.1\| hypothetical protein [symbiont bacterium of Paederus fuscipes]	1.0E-38	[1..119]	[1..119]
gi\|28850565, gi\|... - gi\|28867331\|ref\|NP_789950.1\| hypothetical protein PSPTO_0091 [Pseudomonas syringae pv. tomato str. D... gi\|213924515, gi... - gi\|213970681\|ref\|ZP_03398806.1\| conserved hypothetical protein [Pseudomonas syringae pv. tomato T1],... tr\|Q88BC6\|Q88BC6... - Uncharacterized protein OS=Pseudomonas syringae pv. tomato (strain DC3000) GN=PSPTO_0091 PE=4 SV=1	3.0E-38	[1..119]	[1..119]
gi\|77385759, gi\|... - gi\|77461756\|ref\|YP_351263.1\| hypothetical protein Pfl01_5535 [Pseudomonas fluorescens Pf0-1], gi\|773...	7.0E-36	[1..120]	[1..120]
gi\|26991955, gi\|... - gi\|26991955\|ref\|NP_747380.1\| hypothetical protein PP_5279 [Pseudomonas putida KT2440], gi\|24987084\|g...	1.0E-35	[1..119]	[1..119]
tr\|I7C9Y7\|I7C9Y7... - Uncharacterized protein OS=Pseudomonas putida (strain DOT-T1E) GN=T1E_2790 PE=4 SV=1 gi\|148550389, gi... - gi\|82739401\|ref\|ZP_00902205.1\| conserved hypothetical protein [Pseudomonas putida F1], gi\|82713524\|g...	2.0E-35	[1..119]	[1..119]
gi\|95113311 - gi\|95113311\|emb\|CAK18039.1\| conserved hypothetical protein [Pseudomonas entomophila L48] gi\|95113311, gi\|... - gi\|95113311\|emb\|CAK18039.1\| conserved hypothetical protein [Pseudomonas entomophila L48], gi\|1047843...	2.0E-35	[1..119]	[1..119]

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Predicted Domain #1

Region A:
Residues: [1-120]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MNIEQIVDFA QANSAPEHYS PAPEKILKGD PKQSVRNHYG SPCGQFNAGI WEGAVGQWTV  60
   61 NYTEHEYCEI IQGVSVLRDR HGNAKTVRAG DRFVIPAGFQ GTWEVLEACR KVYVIFEAKA 120
  121

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	20.0
Match:	2pytA
Description:	No description for 2pytA was found.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits