YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|107104149
Organism:	Pseudomonas aeruginosa PACS2
Length:	71 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|107104149.

Description	E-value	Query Range	Subject Range
gi\|148550162, gi... - gi\|82736115\|ref\|ZP_00898975.1\| Ribosomal protein L31 [Pseudomonas putida F1], gi\|82716758\|gb\|EAP5181... gi\|24986872, gi\|... - gi\|26991763\|ref\|NP_747188.1\| ribosomal protein L31 [Pseudomonas putida KT2440], gi\|24986872\|gb\|AAN70...	7.0E-27	[1..71]	[30..100]
RL31_PSEHT - 50S ribosomal protein L31 OS=Pseudoalteromonas haloplanktis (strain TAC 125) GN=rpmE PE=3 SV=1	3.0E-26	[1..71]	[1..71]
RL31_MANSM - 50S ribosomal protein L31 OS=Mannheimia succiniciproducens (strain MBEL55E) GN=rpmE PE=3 SV=2	5.0E-26	[1..71]	[1..71]
RL31_HISS2 - 50S ribosomal protein L31 OS=Histophilus somni (strain 2336) GN=rpmE PE=3 SV=1	5.0E-26	[1..70]	[1..70]
RL31_ACTSZ - 50S ribosomal protein L31 OS=Actinobacillus succinogenes (strain ATCC 55618 / 130Z) GN=rpmE PE=3 SV=...	5.0E-26	[1..71]	[1..71]
gi\|88819060, gi\|... - gi\|88858834\|ref\|ZP_01133475.1\| 50S ribosomal subunit protein L31 [Pseudoalteromonas tunicata D2], gi...	6.0E-26	[1..71]	[5..75]
gi\|113461613, gi... - gi\|113461613\|ref\|YP_719682.1\| 50S ribosomal protein L31P [Haemophilus somnus 129PT], gi\|112823656\|gb...	1.0E-25	[1..70]	[8..77]
gi\|62182555, gi\|... - gi\|62182555\|ref\|YP_218972.1\| 50S ribosomal protein L31 [Salmonella enterica subsp. enterica serovar ...	2.0E-25	[1..70]	[34..103]
gi\|23104854, gi\|... - gi\|67158011\|ref\|ZP_00419101.1\| Ribosomal protein L31 [Azotobacter vinelandii AvOP], ref\|ZP_00091314.... RL31_AZOVD - 50S ribosomal protein L31 OS=Azotobacter vinelandii (strain DJ / ATCC BAA-1303) GN=rpmE PE=3 SV=1	2.0E-25	[1..70]	[1..70]

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Predicted Domain #1

Region A:
Residues: [1-71]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKADIHPTYE AIEATCSCGN VIKTRSTLCK PIHLDVCSEC HPFYTGKQKV LDTGGRIDRF  60
   61 KQRFGVFGAT K

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	25.0
Match:	1vs6Z
Description:	No description for 1vs6Z was found.

Predicted functions:

Term	Confidence	Notes
structural constituent of ribosome	9.93798084434094	bayes_pls_golite062009
structural molecule activity	9.3625249805433	bayes_pls_golite062009
binding	0.865205020833206	bayes_pls_golite062009
protein binding	0.159303137691685	bayes_pls_golite062009

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: