YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|107103992
Organism:	Pseudomonas aeruginosa PACS2
Length:	204 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|107103992.

Description	E-value	Query Range	Subject Range
UREG_AZOVD - Urease accessory protein UreG OS=Azotobacter vinelandii (strain DJ / ATCC BAA-1303) GN=ureG PE=3 SV=... gi\|67154225, gi\|... - gi\|67154225\|ref\|ZP_00415970.1\| Urease accessory protein UreG [Azotobacter vinelandii AvOP], ref\|ZP_0...	2.0E-41	[1..204]	[1..204]
gi\|254435739, gi... - gi\|254435739\|ref\|ZP_05049246.1\| urease accessory protein UreG [Nitrosococcus oceani AFC27], gi\|22440... UREG_NITOC - Urease accessory protein UreG OS=Nitrosococcus oceani (strain ATCC 19707 / NCIMB 11848) GN=ureG PE=3... gi\|207088850 - gi\|207088850\|gb\|EDZ66122.1\| urease accessory protein UreG [Nitrosococcus oceani AFC27]	6.0E-41	[1..203]	[1..203]
gi\|49079372 - gi\|49079372\|gb\|AAT49885.1\| PA4893 [synthetic construct]	1.0E-40	[1..204]	[1..204]
UREG_PSEA7 - Urease accessory protein UreG OS=Pseudomonas aeruginosa (strain PA7) GN=ureG PE=3 SV=1	2.0E-40	[1..204]	[1..204]
gi\|86608358 - gi\|86608358\|ref\|YP_477120.1\| urease accessory protein UreG [Cyanobacteria bacterium Yellowstone B-Pr... gi\|86556900, gi\|... - gi\|86608358\|ref\|YP_477120.1\| urease accessory protein UreG [Synechococcus sp. JA-2-3B'a(2-13)], gi\|8...	3.0E-40	[2..202]	[8..208]
gi\|17228230, gi\|... - gi\|17228230\|ref\|NP_484778.1\| urease accessory protein G [Nostoc sp. PCC 7120], gi\|17130080\|dbj\|BAB72... gi\|25313854 - pir\|\|AE1898 urease accessory protein G [imported] - Nostoc sp. (strain PCC 7120)	1.0E-39	[4..199]	[2..197]
gi\|111616062, gi... - gi\|111616062\|ref\|ZP_01403094.1\| urease accessory protein UreG [Acidovorax avenae subsp. citrulli AAC...	1.0E-39	[5..201]	[139..339]
gi\|75910832, gi\|... - gi\|75910832\|ref\|YP_325128.1\| urease accessory protein UreG [Anabaena variabilis ATCC 29413], gi\|7570...	2.0E-39	[4..199]	[2..197]
UREG_BACHD - Urease accessory protein UreG OS=Bacillus halodurans GN=ureG PE=3 SV=1 UREG_BACHD - Urease accessory protein UreG OS=Bacillus halodurans (strain ATCC BAA-125 / DSM 18197 / FERM 7344 / ...	5.0E-39	[4..202]	[2..200]
gi\|114328831, gi... - gi\|114328831\|ref\|YP_745988.1\| urease accessory protein ureG [Granulibacter bethesdensis CGDNIH1], gi...	8.0E-39	[2..201]	[11..210]

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Predicted Domain #1

Region A:
Residues: [1-204]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MTSQPLRVGI GGPVGSGKTA LTLALCRELR ERYNLAVVTN DIYTQEDAEF LVRNEALAPE  60
   61 RIIGVETGGC PHTAIREDAS INLEAVDQLN RRFPGLELIL VESGGDNLSA TFSPELSDLT 120
  121 LYVIDVSAGD KIPRKGGPGI CKSDLLVINK IDLAPLVGAS LDVMDRDARR MRGDKPFVFS 180
  181 NQKTGQGLDE IIAFIERQGL LTAA

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	24.69897
Match:	2hf8A
Description:	No description for 2hf8A was found.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits