YRC Logo
PROTEIN SEARCH:
Descriptions Names[Advanced Search]

View Structure Prediction Details

Protein: KCMB4_MOUSE
Organism: Mus musculus
Length: 210 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



[What does the above image mean?]


[Show Ginzu Version Information]


Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for KCMB4_MOUSE.

Description E-value Query
Range
Subject
Range
gi|7799988 - gi|7799988|gb|AAF69805.1|AF160967_1 large-conductance calcium-activated potassium channel beta subun...
327.0 [0..1] [210..1]
KCMB4_RAT - Calcium-activated potassium channel subunit beta-4 OS=Rattus norvegicus GN=Kcnmb4 PE=2 SV=1
324.0 [0..1] [210..1]
gi|45239317 - gi|45239317|gb|AAS55654.1| calcium-activated potassium channel beta 4 subunit [Meriones unguiculatus...
319.0 [0..1] [210..1]
gi|74003783 - gi|74003783|ref|XP_545302.2| PREDICTED: similar to calcium-activated potassium channel beta 2 subuni...
312.0 [0..12] [206..229]
KCMB2_MOUSE - Calcium-activated potassium channel subunit beta-2 OS=Mus musculus GN=Kcnmb2 PE=2 SV=1
307.0 [0..12] [206..42]
gi|122692469, gi... - gi|92096694|gb|AAI14666.1| Potassium large conductance calcium-activated channel, subfamily M beta m...
305.0 [0..12] [206..42]

Back

Predicted Domain #1
Region A:
Residues: [1-110]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAKLRVSYEY TEAEDKSIRL GLFLIVSGIL SLFIFGFCWL SPALQDLQAT AANCTVLSVQ  60
   61 QIGEVFECTF TCGTDCRGTS QYPCVQVYVN NSESNSRALL HSDQHQLLTN 

[Run NCBI BLAST on this sequence.]

Detection Method: MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #2
Region A:
Residues: [111-210]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 PKCSYIPPCK RENQKNSESV MNWQQYWKDE IGSQPFTCYF NQHQRPEDVL LQRTHDEIAL  60
   61 LHCFLWPVVA FVVGVLIVVL TICAKSLAVK AEAMKKRKFS 

[Run NCBI BLAST on this sequence.]

Detection Method: MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.


YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle