YRC Public Data Repository - Protein Structure Prediction

Protein:	YIPF7_MOUSE
Organism:	Mus musculus
Length:	254 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for YIPF7_MOUSE.

Description	E-value	Query Range	Subject Range
gi\|114602515, gi... - gi\|114602517\|ref\|XP_518011.2\| PREDICTED: smooth muscle cell associated protein 5 isoform 3 [Pan trog... YIPF5_PONPY - Protein YIPF5 - Pongo pygmaeus (Orangutan) YIPF5 - Yip1 domain family, member 5 YIPF5_PONAB - Protein YIPF5 OS=Pongo abelii GN=YIPF5 PE=2 SV=1	272.0	[0..1]	[254..1]
YIPF5_MACFA - Protein YIPF5 OS=Macaca fascicularis GN=YIPF5 PE=2 SV=1 CCDS4279.1_1 - null gi\|109079155, gi... - gi\|109079159\|ref\|XP_001098831.1\| PREDICTED: similar to smooth muscle cell associated protein 5 isofo...	272.0	[0..1]	[254..1]
gi\|57042739 - gi\|57042739\|ref\|XP_535226.1\| PREDICTED: similar to smooth muscle cell associated protein 5 [Canis fa...	271.0	[0..1]	[254..1]
gi\|115371747, gi... - gi\|116175279\|ref\|NP_001070693.1\| Yip1 domain family, member 5 [Sus scrofa], gi\|115371747\|gb\|ABI96198...	270.0	[0..1]	[254..1]
gi\|109500571, gi... - gi\|34877403\|ref\|XP_344237.1\| PREDICTED: similar to Yip1 domain family, member 7 [Rattus norvegicus],...	268.0	[0..1]	[254..1]
gi\|50755224 - gi\|50755224\|ref\|XP_414661.1\| PREDICTED: similar to Yip1 domain family, member 5 [Gallus gallus]	258.0	[0..1]	[254..1]
gi\|47219252 - gi\|47219252\|emb\|CAG11714.1\| unnamed protein product [Tetraodon nigroviridis]	257.0	[0..1]	[254..1]
YIPF5_BOVIN - Protein YIPF5 OS=Bos taurus GN=YIPF5 PE=2 SV=1	257.0	[0..1]	[254..1]

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Predicted Domain #1

Region A:
Residues: [1-86]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSNPEQYDMG FYQSNYIIDN QEPSCNDSNA YGNVYGYREP QATEQPSSPA PPEMFLPSDY  60
   61 GGQLFQPASN LDYYSQSPSV DTFDEE

[Run NCBI BLAST on this sequence.]

Detection Method:	FFAS03
Confidence:	0.98
Match:	1qd7B
Description:	30S subunit
Matching Structure (courtesy of the PDB):

Predicted Domain #2

Region A:
Residues: [87-254]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 PPLLEELGIN FDHIWQKTLT VLNPMKPADG SIMNETDLTG PILFCVALGA TLLMAGKAQF  60
   61 GYVYGMSAIG CLGIHALLNL MSNSGVSYGC VASVLGYCLL PMVLLSSCAV FFSLQGTIGT 120
  121 MSALLIITWC SLSASKIFIS ALAMEGQQLL VAYPCALLYG LFALLTVF

[Run NCBI BLAST on this sequence.]

Detection Method:	Pfam
Confidence:	53.920819
Match:	PF04893.8
Description:	No description for PF04893.8 was found.

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits