YRC Public Data Repository - Protein Structure Prediction

Protein:	CCL28_MOUSE
Organism:	Mus musculus
Length:	130 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for CCL28_MOUSE.

Description	E-value	Query Range	Subject Range
gi\|114600407 - gi\|114600407\|ref\|XP_001135733.1\| PREDICTED: chemokine (C-C motif) ligand 28 [Pan troglodytes] CCL28 - chemokine (C-C motif) ligand 28	134.0	[0..1]	[129..1]
gi\|74136319, gi\|... - gi\|74136319\|ref\|NP_001028049.1\| chemokine (C-C motif) ligand 28 [Macaca mulatta], gi\|25987922\|gb\|AAN...	133.0	[0..1]	[129..1]
gi\|14029655, gi\|... - gi\|16758516\|ref\|NP_446152.1\| CC chemokine CCL28 [Rattus norvegicus], gi\|14029655\|gb\|AAK52773.1\|AF361...	131.0	[0..1]	[130..1]
gi\|74203356 - gi\|74203356\|dbj\|BAE20845.1\| unnamed protein product [Mus musculus]	117.0	[0..1]	[129..1]

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Predicted Domain #1

Region A:
Residues: [1-130]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MQQAGLTLMA VAVCVAFQTS EAILPMASSC CTEVSHHVSG RLLERVSSCS IQRADGDCDL  60
   61 AAVILHVKRR RICISPHNRT LKQWMRASEV KKNGRENVCS GKKQPSRKDR KGHTTRKHRT 120
  121 RGTHRHEASR

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	18.30103
Match:	1j8iA
Description:	Lymphotactin
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits