YRC Public Data Repository - Protein Structure Prediction

Protein:	ELOV6_MOUSE
Organism:	Mus musculus
Length:	267 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for ELOV6_MOUSE.

Description	E-value	Query Range	Subject Range
gi\|73973376 - gi\|73973376\|ref\|XP_852962.1\| PREDICTED: similar to homolog of yeast long chain polyunsaturated fatty...	254.0	[0..2]	[265..175]
gi\|76672739 - gi\|76672739\|ref\|XP_610522.2\| PREDICTED: similar to elongation of very long chain fatty acids (FEN1/E...	252.0	[0..7]	[263..442]
gi\|50744984 - gi\|50744984\|ref\|XP_426204.1\| PREDICTED: similar to fatty acid elongase 1 [Gallus gallus]	251.0	[0..6]	[265..552]
gi\|26324996 - gi\|26324996\|dbj\|BAC26252.1\| unnamed protein product [Mus musculus]	247.0	[0..1]	[267..1]
ELOVL6 - ELOVL family member 6, elongation of long chain fatty acids (FEN1/Elo2, SUR4/Elo3-like, yeast) gi\|55623062, gi\|... - gi\|55623062\|ref\|XP_517396.1\| PREDICTED: hypothetical protein LOC461436 isoform 5 [Pan troglodytes], ...	245.0	[0..1]	[267..1]
CCDS3690.1_1 - null gi\|109075355, gi... - gi\|109075355\|ref\|XP_001089881.1\| PREDICTED: similar to ELOVL family member 6, elongation of long cha...	244.0	[0..1]	[267..1]
Baldspot-PB, Bal... - The gene Baldspot is referred to in FlyBase by the symbol Dmel\Baldspot (CG3971, FBgn0260960). It is... gi\|220943496, gi... - gi\|220953518\|gb\|ACL89302.1\| Baldspot-PA [synthetic construct], gi\|220943496\|gb\|ACL84291.1\| Baldspot-...	243.0	[0..1]	[266..4]
gi\|157134562, gi... - gi\|157134562\|ref\|XP_001656366.1\| elongase, putative [Aedes aegypti], gi\|108870432\|gb\|EAT34657.1\| elo...	243.0	[0..1]	[266..1]
gi\|54641815\|gb\|E... - GA17812-PA [Drosophila pseudoobscura], GA17812 [Drosophila pseudoobscura pseudoobscura] gi\|125978062, gi... - gi\|54641815\|gb\|EAL30565.1\| GA17812 [Drosophila pseudoobscura pseudoobscura], gi\|125978062\|ref\|XP_001...	240.0	[0..1]	[266..4]

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Predicted Domain #1

Region A:
Residues: [1-104]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MNMSVLTLQE YEFEKQFNEN EAIQWMQENW KKSFLFSALY AAFIFGGRHL MNKRAKFELR  60
   61 KPLVLWSLTL AVFSIFGALR TGAYMLYILM TKGLKQSVCD QSFY

[Run NCBI BLAST on this sequence.]

Detection Method:

MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #2

Region A:
Residues: [105-267]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 NGPVSKFWAY AFVLSKAPEL GDTIFIILRK QKLIFLHWYH HITVLLYSWY SYKDMVAGGG  60
   61 WFMTMNYGVH AVMYSYYALR AAGFRVSRKF AMFITLSQIT QMLMGCVINY LVFNWMQHDN 120
  121 DQCYSHFQNI FWSSLMYLSY LVLFCHFFFE AYIGKVKKAT KAE

[Run NCBI BLAST on this sequence.]

Detection Method:

MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits