YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|89108033, gi\|...
Organism:	Escherichia coli str. K-12 substr. W3110
Length:	510 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|89108033, gi|....

Description	E-value	Query Range	Subject Range
gi\|56127534, gi\|... - gi\|56413277\|ref\|YP_150352.1\| SpoVR family protein [Salmonella enterica subsp. enterica serovar Parat... gi\|197093679, gi... - gi\|197362202\|ref\|YP_002141839.1\| SpoVR family protein [Salmonella enterica subsp. enterica serovar P... gi\|194457017, gi... - gi\|194470653\|ref\|ZP_03076637.1\| SpoVR family protein [Salmonella enterica subsp. enterica serovar Ke... gi\|168820551, gi... - gi\|205342721\|gb\|EDZ29485.1\| SpoVR family protein [Salmonella enterica subsp. enterica serovar Weltev... gi\|168233848, gi... - gi\|205332140\|gb\|EDZ18904.1\| SpoVR family protein [Salmonella enterica subsp. enterica serovar Kentuc...	896.0	[0..1]	[510..1]
gi\|29141548, gi\|... - gi\|29141548\|ref\|NP_804890.1\| hypothetical protein t1073 [Salmonella enterica subsp. enterica serovar... gi\|214002619 - gi\|214002619\|ref\|ZP_03413354.1\| hypothetical protein Salmonellentericaenterica_20689 [Salmonella ent... gi\|16760694 - gi\|16760694\|ref\|NP_456311.1\| hypothetical protein STY1933 [Salmonella enterica subsp. enterica serov... gi\|213648193 - gi\|213648193\|ref\|ZP_03378246.1\| hypothetical protein SentesTy_13429 [Salmonella enterica subsp. ente... gi\|198241991, gi... - gi\|198241991\|ref\|YP_002215337.1\| SpoVR family protein [Salmonella enterica subsp. enterica serovar D... gi\|25357320, gi\|... - gi\|25357320\|pir\|\|AE0723 conserved hypothetical protein STY1933 [imported] - Salmonella enterica subs...	895.0	[0..1]	[510..1]
gi\|238912132 - gi\|238912132\|ref\|ZP_04655969.1\| SpoVR family protein [Salmonella enterica subsp. enterica serovar Te... gi\|204927955, gi... - gi\|204927955\|ref\|ZP_03219156.1\| SpoVR family protein [Salmonella enterica subsp. enterica serovar Ja... gi\|197250495, gi... - gi\|197250495\|ref\|YP_002146220.1\| SpoVR family protein [Salmonella enterica subsp. enterica serovar A... gi\|194735382, gi... - gi\|194735382\|ref\|YP_002114838.1\| SpoVR family protein [Salmonella enterica subsp. enterica serovar S... gi\|205350985, gi... - gi\|205350985\|gb\|EDZ37616.1\| SpoVR family protein [Salmonella enterica subsp. enterica serovar Hadar ... gi\|197289293, gi... - gi\|197289293\|gb\|EDY28660.1\| SpoVR family protein [Salmonella enterica subsp. enterica serovar Schwar... gi\|62128000, gi\|... - gi\|62180367\|ref\|YP_216784.1\| hypothetical protein SC1797 [Salmonella enterica subsp. enterica serova...	894.0	[0..1]	[510..1]
gi\|205328650, gi... - gi\|205328650\|gb\|EDZ15414.1\| SpoVR family protein [Salmonella enterica subsp. enterica serovar 4,[5],... gi\|16420335 - gi\|16420335\|gb\|AAL20719.1\| putative cytoplasmic protein [Salmonella enterica subsp. enterica serovar...	893.0	[0..1]	[510..1]
gi\|82776519, gi\|... - gi\|82776519\|ref\|YP_402868.1\| hypothetical protein SDY_1225 [Shigella dysenteriae Sd197], gi\|81240667... gi\|75241988, gi\|... - gi\|75241988\|ref\|ZP_00725782.1\| COG2719: Uncharacterized conserved protein [Escherichia coli F11], gi... gi\|110641413, gi... - gi\|110641413\|ref\|YP_669143.1\| SpoVR family protein [Escherichia coli 536], gi\|110343005\|gb\|ABG69242....	889.0	[0..1]	[510..1]
gi\|168750752, gi... - gi\|188015069\|gb\|EDU53191.1\| SpoVR family protein [Escherichia coli O157:H7 str. EC4113], gi\|16875075... gi\|189356345, gi... - gi\|189356345\|gb\|EDU74764.1\| SpoVR family protein [Escherichia coli O157:H7 str. EC4401], gi\|16875655... gi\|189360042, gi... - gi\|189360042\|gb\|EDU78461.1\| SpoVR family protein [Escherichia coli O157:H7 str. EC4486], gi\|16877108... gi\|117623402, gi... - gi\|117623402\|ref\|YP_852315.1\| hypothetical protein APECO1_300 [Escherichia coli APEC O1], gi\|1155125... gi\|26107903, gi\|... - gi\|26247502\|ref\|NP_753542.1\| hypothetical protein c1637 [Escherichia coli CFT073], gi\|26107903\|gb\|AA... gi\|209772660, gi... - pir\|\|C85697 probable sporulation protein ycgB [imported] - Escherichia coli (strain O157:H7, substra... gi\|12514885, gi\|... - gi\|15801410\|ref\|NP_287427.1\| hypothetical protein Z1951 [Escherichia coli O157:H7 EDL933], gi\|125148... gi\|13361147, gi\|... - gi\|15830937\|ref\|NP_309710.1\| putative sporulation protein [Escherichia coli O157:H7], gi\|13361147\|db... gi\|91071975, gi\|... - gi\|91210401\|ref\|YP_540387.1\| hypothetical protein UTI89_C1374 [Escherichia coli UTI89], gi\|91071975\|... gi\|13361147, gi\|... - gi\|15830937\|ref\|NP_309710.1\| SpoVR family protein [Escherichia coli O157:H7 str. Sakai], gi\|13361147... gi\|209158317, gi... - gi\|209396917\|ref\|YP_002270128.1\| SpoVR family protein [Escherichia coli O157:H7 str. EC4115], gi\|209... gi\|227836603, gi... - gi\|227886399\|ref\|ZP_04004204.1\| stage V sporulation protein R [Escherichia coli 83972], gi\|227836603... gi\|218364881, gi... - gi\|218558112\|ref\|YP_002391025.1\| SpoVR family protein [Escherichia coli S88], gi\|218364881\|emb\|CAR02... gi\|237705144, gi... - gi\|237705144\|ref\|ZP_04535625.1\| conserved hypothetical protein [Escherichia sp. 3_2_53FAA], gi\|22689... gi\|218431800, gi... - gi\|218704703\|ref\|YP_002412222.1\| SpoVR family protein [Escherichia coli UMN026], gi\|218431800\|emb\|CA... gi\|189000022, gi... - gi\|189000022\|gb\|EDU69008.1\| SpoVR family protein [Escherichia coli O157:H7 str. EC4076], gi\|16878254... gi\|195938843 - gi\|195938843\|ref\|ZP_03084225.1\| hypothetical protein EscherichcoliO157_20867 [Escherichia coli O157:... gi\|208816253, gi... - gi\|208816253\|ref\|ZP_03257432.1\| SpoVR family protein [Escherichia coli O157:H7 str. EC4045], gi\|2087... gi\|254792665, gi... - gi\|254792665\|ref\|YP_003077502.1\| hypothetical protein ECSP_1585 [Escherichia coli O157:H7 str. TW143... gi\|208822461, gi... - gi\|208822461\|ref\|ZP_03262780.1\| SpoVR family protein [Escherichia coli O157:H7 str. EC4042], gi\|2087...	889.0	[0..1]	[510..1]
gi\|73855195, gi\|... - gi\|74311718\|ref\|YP_310137.1\| hypothetical protein SSON_1180 [Shigella sonnei Ss046], gi\|73855195\|gb\|...	886.0	[0..1]	[510..1]
gi\|30062705, gi\|... - gi\|30062705\|ref\|NP_836876.1\| hypothetical protein S1265 [Shigella flexneri 2a str. 2457T], gi\|300409...	886.0	[0..1]	[510..1]
gi\|194415820, gi... - gi\|75212626\|ref\|ZP_00712624.1\| COG2719: Uncharacterized conserved protein [Escherichia coli B171], g...	884.0	[0..1]	[510..1]

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Predicted Domain #1

Region A:
Residues: [1-148]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MATIDSMNKD TTRLSDGPDW TFDLLDVYLA EIDRVAKLYR LDTYPHQIEV ITSEQMMDAY  60
   61 SSVGMPINYP HWSFGKKFIE TERLYKHGQQ GLAYEIVINS NPCIAYLMEE NTITMQALVM 120
  121 AHACYGHNSF FKNNYLFRSW TDASSIVD

[Run NCBI BLAST on this sequence.]

Detection Method:

MSA

Shown below are all of our structure predictions for this domain.
Click here to view only most confident match.

Found no structure predictions for this domain.

Predicted Domain #2

Region A:
Residues: [149-299]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 YLIFARKYIT ECEERYGVDE VERLLDSCHA LMNYGVDRYK RPQKISLQEE KARQKSREEY  60
   61 LQSQVNMLWR TLPKREEEKT VAEARRYPSE PQENLLYFME KNAPLLESWQ REILRIVRKV 120
  121 SQYFYPQKQT QVMNEGWATF WHYTILNHLY D

[Run NCBI BLAST on this sequence.]

Detection Method:

deduced

Shown below are all of our de novo (Rosetta) predictions for this domain.
Click here to view only most confident match.

		MCM Score	SCOP Match	SCOP Description
View	Download	0.332	a.26.1	4-helical cytokines
View	Download	0.319	e.20.1	Heat shock protein 70kD (HSP70), C-terminal substrate-binding fragment
View	Download	0.306	a.24.4	Hemerythrin
View	Download	0.301	a.24.4	Hemerythrin
View	Download	0.298	d.14.1	Ribosomal protein S5 domain 2-like

Predicted Domain #3

Region A:
Residues: [300-510]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 EGKVTERFML EFLHSHTNVV FQPPYNSPWY SGINPYALGF AMFQDIKRIC QSPTEEDKYW  60
   61 FPDIAGSDWL ETLHFAMRDF KDESFISQFL SPKVMRDFRF FTVLDDDRHN YLEISAIHNE 120
  121 EGYREIRNRL SSQYNLSNLE PNIQIWNVDL RGDRSLTLRY IPHNRAPLDR GRKEVLKHVH 180
  181 RLWGFDVMLE QQNEDGSIEL LERCPPRMGN L

[Run NCBI BLAST on this sequence.]

Detection Method:

MSA

Shown below are all of our structure predictions for this domain.
Click here to view only most confident match.

		MCM Score	GO Score	GO Term	SCOP Match	SCOP Description
View	Download	0.306	N/A	N/A	a.24.9	alpha-catenin/vinculin
View	Download	0.269	N/A	N/A	a.26.1	4-helical cytokines
View	Download	0.240	N/A	N/A	d.110.2	GAF domain-like
View	Download	0.218	N/A	N/A	a.4.5	"Winged helix" DNA-binding domain
View	Download	0.206	N/A	N/A	a.24.17	Group V grass pollen allergen

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits