YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|110616512, gi...
Organism:	Shigella flexneri 5 str. 8401
Length:	138 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|110616512, gi....

Description	E-value	Query Range	Subject Range
gi\|193062115, gi... - gi\|75260014\|ref\|ZP_00731292.1\| COG5499: Predicted transcription regulator containing HTH domain [Esc... gi\|194427722, gi... - gi\|75211035\|ref\|ZP_00711148.1\| COG5499: Predicted transcription regulator containing HTH domain [Esc... gi\|218433803, gi... - gi\|218706706\|ref\|YP_002414225.1\| putative DNA-binding transcriptional regulator [Escherichia coli UM...	153.0	[0..1]	[138..1]
gi\|82545338, gi\|... - gi\|82545338\|ref\|YP_409285.1\| hypothetical protein SBO_2943 [Shigella boydii Sb227], gi\|81246749\|gb\|A...	152.0	[0..1]	[138..1]
gi\|74313524, gi\|... - gi\|74313524\|ref\|YP_311943.1\| hypothetical protein SSON_3123 [Shigella sonnei Ss046], gi\|73857001\|gb\|... gi\|187427631, gi... - gi\|75176058\|ref\|ZP_00696226.1\| COG5499: Predicted transcription regulator containing HTH domain [Shi...	151.0	[0..1]	[138..1]
gi\|110344918, gi... - gi\|110643326\|ref\|YP_671056.1\| hypothetical protein ECP_3173 [Escherichia coli 536], gi\|110344918\|gb\|...	151.0	[0..1]	[138..1]
gi\|157162558, gi... - gi\|75197035\|ref\|ZP_00707105.1\| COG5499: Predicted transcription regulator containing HTH domain [Esc...	150.0	[0..1]	[138..1]
gi\|208738907, gi... - gi\|208818784\|ref\|ZP_03259104.1\| helix-turn-helix DNA-binding domain protein [Escherichia coli O157:H... gi\|209398621, gi... - gi\|209398621\|ref\|YP_002272555.1\| helix-turn-helix DNA-binding domain protein [Escherichia coli O157:... gi\|217327226, gi... - gi\|217327226\|ref\|ZP_03443309.1\| helix-turn-helix DNA-binding domain protein [Escherichia coli O157:H... gi\|189379678, gi... - gi\|189379678\|gb\|EDU98094.1\| helix-turn-helix DNA-binding domain protein [Escherichia coli O157:H7 st... gi\|195937228 - gi\|195937228\|ref\|ZP_03082610.1\| hypothetical protein EscherichcoliO157_12366 [Escherichia coli O157:... gi\|208728042, gi... - gi\|208808241\|ref\|ZP_03250578.1\| helix-turn-helix DNA-binding domain protein [Escherichia coli O157:H... gi\|208733184, gi... - gi\|208811907\|ref\|ZP_03253236.1\| helix-turn-helix DNA-binding domain protein [Escherichia coli O157:H... gi\|168769494, gi... - gi\|189361437\|gb\|EDU79856.1\| helix-turn-helix DNA-binding domain protein [Escherichia coli O157:H7 st... gi\|187770803, gi... - gi\|187770803\|gb\|EDU34647.1\| helix-turn-helix DNA-binding domain protein [Escherichia coli O157:H7 st... gi\|189001136, gi... - gi\|189001136\|gb\|EDU70122.1\| helix-turn-helix DNA-binding domain protein [Escherichia coli O157:H7 st... gi\|189374071, gi... - gi\|189374071\|gb\|EDU92487.1\| helix-turn-helix DNA-binding domain protein [Escherichia coli O157:H7 st... gi\|188016323, gi... - gi\|188016323\|gb\|EDU54445.1\| helix-turn-helix DNA-binding domain protein [Escherichia coli O157:H7 st... gi\|189358676, gi... - gi\|189358676\|gb\|EDU77095.1\| helix-turn-helix DNA-binding domain protein [Escherichia coli O157:H7 st... gi\|168762039, gi... - gi\|189367610\|gb\|EDU86026.1\| helix-turn-helix DNA-binding domain protein [Escherichia coli O157:H7 st... gi\|13363437, gi\|... - gi\|15833218\|ref\|NP_311991.1\| hypothetical protein ECs3964 [Escherichia coli O157:H7 str. Sakai], gi\|... gi\|254795033, gi... - gi\|254795033\|ref\|YP_003079870.1\| predicted DNA-binding transcriptional regulator [Escherichia coli O... gi\|13363437, gi\|... - gi\|15833218\|ref\|NP_311991.1\| hypothetical protein ECs3964 [Escherichia coli O157:H7], gi\|13363437\|db... gi\|209759110, gi... - pir\|\|C85969 hypothetical protein ygjM [imported] - Escherichia coli (strain O157:H7, substrain EDL9... gi\|15803623, gi\|... - gi\|15803623\|ref\|NP_289656.1\| hypothetical protein Z4435 [Escherichia coli O157:H7 EDL933], gi\|125176...	148.0	[0..1]	[138..1]
gi\|82778408, gi\|... - gi\|82778408\|ref\|YP_404757.1\| hypothetical protein SDY_3266 [Shigella dysenteriae Sd197], gi\|81242556...	147.0	[0..1]	[138..1]
gi\|31580588, gi\|... - gi\|31790982\|ref\|NP_857617.1\| hypothetical protein pEJ30_p08 [Erwinia sp. Ejp 556], gi\|31580588\|gb\|AA...	142.0	[0..2]	[138..1]
gi\|93455525, gi\|... - gi\|94264109\|ref\|ZP_01287908.1\| Helix-turn-helix motif [delta proteobacterium MLMS-1], gi\|93455525\|gb...	133.0	[0..2]	[137..1]
gi\|49609852, gi\|... - gi\|50119326\|ref\|YP_048493.1\| putative DNA-binding protein [Pectobacterium atrosepticum SCRI1043], gi...	133.0	[0..2]	[138..1]

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Predicted Domain #1

Region A:
Residues: [1-138]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MIAIADILQA GEKLTAVAPF LAGIQNEEQY TQALELVDHL LLNDPENPLL DLVCAKITAW  60
   61 EESAPEFAEF NAMAQAMPGG IAVIRTLMDQ YGLTLSDLPE IGSKSMVSRV LSGKRKLTLE 120
  121 HAKKLATRFG ISPALFID

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	11.69897
Match:	2ebyA
Description:	No description for 2ebyA was found.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits