YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|110617020, gi...
Organism:	Shigella flexneri 5 str. 8401
Length:	103 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|110617020, gi....

Description	E-value	Query Range	Subject Range
gi\|73857826, gi\|... - gi\|74314349\|ref\|YP_312768.1\| twin argininte translocase protein A [Shigella sonnei Ss046], gi\|738578...	112.0	[0..1]	[103..1]
gi\|91213385, gi\|... - gi\|91213385\|ref\|YP_543371.1\| twin argininte translocase protein A [Escherichia coli UTI89], gi\|91074...	109.0	[0..1]	[103..1]
gi\|25302684 - gi\|25302684\|pir\|\|D86071 hypothetical protein tatA [imported] - Escherichia coli (strain O157:H7, su... gi\|15804428, gi\|... - gi\|15804428\|ref\|NP_290468.1\| twin argininte translocase protein A [Escherichia coli O157:H7 EDL933],...	108.0	[0..1]	[103..1]
TATB_SODGM - Sec-independent protein translocase protein TatB OS=Sodalis glossinidius (strain morsitans) GN=tatB ...	96.0	[0..15]	[101..1]
gi\|116220886, gi... - gi\|75820020\|ref\|ZP_00750078.1\| COG1826: Sec-independent protein secretion pathway components [Vibrio... gi\|153826632, gi... - gi\|153826632\|ref\|ZP_01979299.1\| conserved hypothetical protein [Vibrio cholerae MZO-2], gi\|149739570...	94.0	[0..15]	[101..1]
TATB_VIBVU - Sec-independent protein translocase protein TatB OS=Vibrio vulnificus GN=tatB PE=3 SV=1 TATB_VIBVU - Sec-independent protein translocase protein TatB OS=Vibrio vulnificus (strain CMCP6) GN=tatB PE=3 SV... TATB_VIBVY - Sec-independent protein translocase protein TatB OS=Vibrio vulnificus (strain YJ016) GN=tatB PE=3 SV...	94.0	[0..15]	[101..1]
gi\|90412762, gi\|... - gi\|90412762\|ref\|ZP_01220763.1\| sec-independent translocase [Photobacterium profundum 3TCK], gi\|90326...	93.0	[0..15]	[101..1]
gi\|77689453, gi\|... - gi\|91977259\|ref\|YP_569918.1\| twin-arginine translocation protein TatB [Rhodopseudomonas palustris Bi...	93.0	[0..13]	[103..13]
gi\|46911761, gi\|... - gi\|54307341\|ref\|YP_128361.1\| sec-independent translocase [Photobacterium profundum SS9], gi\|46911761...	93.0	[0..15]	[101..1]
TATB_PECAS - Sec-independent protein translocase protein TatB OS=Pectobacterium atrosepticum (strain SCRI 1043 / ... TATB_ERWCT - Sec-independent protein translocase protein TatB OS=Erwinia carotovora subsp. atroseptica GN=tatB PE...	92.0	[0..15]	[101..1]

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Predicted Domain #1

Region A:
Residues: [1-103]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MRLCLIIIYH RGTCMGGISI WQLLIIAVIV VLLFGTKKLG SIGSDLGASI KGFKKAMSDD  60
   61 EPKQDKTSQD ADFTAKTIAD KQADTNQEQA KTEDAKRHDK EQV

[Run NCBI BLAST on this sequence.]

Detection Method:	Pfam
Confidence:	12.769551
Match:	PF02416.7
Description:	No description for PF02416.7 was found.

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits