YRC Public Data Repository - Protein Structure Prediction

Protein:	YFCN_SHIF8
Organism:	Shigella flexneri 5 str. 8401
Length:	183 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for YFCN_SHIF8.

Description	E-value	Query Range	Subject Range
gi\|13362685, gi\|... - gi\|15832469\|ref\|NP_311242.1\| hypothetical protein ECs3214 [Escherichia coli O157:H7 str. Sakai], gi\|... gi\|188017223, gi... - gi\|188017223\|gb\|EDU55345.1\| Smr domain protein [Escherichia coli O157:H7 str. EC4113], gi\|168748187\|... gi\|209764684, gi... - pir\|\|G91030 hypothetical protein ECs3214 [imported] - Escherichia coli (strain O157:H7, substrain R... YFCN_ECO5E - UPF0115 protein YfcN OS=Escherichia coli O157:H7 (strain EC4115 / EHEC) GN=yfcN PE=3 SV=1 gi\|208818629, gi... - gi\|208818629\|ref\|ZP_03258949.1\| Smr domain protein [Escherichia coli O157:H7 str. EC4042], gi\|208738... gi\|208811878, gi... - gi\|208811878\|ref\|ZP_03253207.1\| Smr domain protein [Escherichia coli O157:H7 str. EC4045], gi\|208733... gi\|208725626, gi... - gi\|208805825\|ref\|ZP_03248162.1\| Smr domain protein [Escherichia coli O157:H7 str. EC4206], gi\|208725... YFCN_ECO57 - UPF0115 protein YfcN OS=Escherichia coli O157:H7 GN=yfcN PE=3 SV=1 gi\|217326950, gi... - gi\|217326950\|ref\|ZP_03443033.1\| Smr domain protein [Escherichia coli O157:H7 str. TW14588], gi\|21731... gi\|254593624, gi... - gi\|254794224\|ref\|YP_003079061.1\| hypothetical protein ECSP_3206 [Escherichia coli O157:H7 str. TW143... gi\|168772936, gi... - gi\|187771017\|gb\|EDU34861.1\| Smr domain protein [Escherichia coli O157:H7 str. EC4196], gi\|168772936\|... gi\|189363015, gi... - gi\|189363015\|gb\|EDU81434.1\| Smr domain protein [Escherichia coli O157:H7 str. EC4486], gi\|168767964\|... gi\|168761224, gi... - gi\|189368226\|gb\|EDU86642.1\| Smr domain protein [Escherichia coli O157:H7 str. EC4501], gi\|168761224\|... gi\|168755090, gi... - gi\|189357716\|gb\|EDU76135.1\| Smr domain protein [Escherichia coli O157:H7 str. EC4401], gi\|168755090\|... gi\|195935711 - gi\|195935711\|ref\|ZP_03081093.1\| hypothetical protein EscherichcoliO157_04492 [Escherichia coli O157:... gi\|168798508, gi... - gi\|189378953\|gb\|EDU97369.1\| Smr domain protein [Escherichia coli O157:H7 str. EC508], gi\|168798508\|r... gi\|168787245, gi... - gi\|189372965\|gb\|EDU91381.1\| Smr domain protein [Escherichia coli O157:H7 str. EC869], gi\|168787245\|r... gi\|168780194, gi... - gi\|189001908\|gb\|EDU70894.1\| Smr domain protein [Escherichia coli O157:H7 str. EC4076], gi\|168780194\|...	210.0	[0..1]	[183..1]
YFCN_SHIDS - UPF0115 protein YfcN OS=Shigella dysenteriae serotype 1 (strain Sd197) GN=yfcN PE=3 SV=1	210.0	[0..1]	[183..1]
YFCN_SHISS - UPF0115 protein YfcN OS=Shigella sonnei (strain Ss046) GN=yfcN PE=3 SV=1	209.0	[0..1]	[183..1]
YFCN_SALPB - UPF0115 protein YfcN OS=Salmonella paratyphi B (strain ATCC BAA-1250 / SPB7) GN=yfcN PE=3 SV=1 YFCN_SALTY - UPF0115 protein yfcN OS=Salmonella typhimurium GN=yfcN PE=3 SV=1 lcl\|NC_016856.1_... - [gene=yfcN] [protein=hypothetical protein] [protein_id=YP_005238470.1] [location=2548312..2548863] YFCN_SALNS - UPF0115 protein YfcN OS=Salmonella newport (strain SL254) GN=yfcN PE=3 SV=1 gi\|205349467, gi... - gi\|205349467\|gb\|EDZ36098.1\| Smr domain protein [Salmonella enterica subsp. enterica serovar Hadar st... gi\|194457670, gi... - gi\|194471306\|ref\|ZP_03077290.1\| Smr domain protein [Salmonella enterica subsp. enterica serovar Kent... YFCN_SALHS - UPF0115 protein YfcN OS=Salmonella heidelberg (strain SL476) GN=yfcN PE=3 SV=1 gi\|205335775, gi... - gi\|205335775\|gb\|EDZ22539.1\| Smr domain protein [Salmonella enterica subsp. enterica serovar Kentucky... gi\|205328808, gi... - gi\|205328808\|gb\|EDZ15572.1\| Smr domain protein [Salmonella enterica subsp. enterica serovar 4,[5],12... gi\|168242512, gi... - gi\|205338530\|gb\|EDZ25294.1\| Smr domain protein [Salmonella enterica subsp. enterica serovar Heidelbe... gi\|197289649, gi... - gi\|197289649\|gb\|EDY29012.1\| Smr domain protein [Salmonella enterica subsp. enterica serovar Schwarze... YFCN_SALPB - UPF0115 protein yfcN OS=Salmonella paratyphi B (strain ATCC BAA-1250 / SPB7) GN=yfcN PE=3 SV=1 YFCN_SALTI - UPF0115 protein YfcN OS=Salmonella typhi GN=yfcN PE=3 SV=1 gi\|167549606, gi... - gi\|205325162\|gb\|EDZ13001.1\| Smr domain protein [Salmonella enterica subsp. enterica serovar Saintpau... gi\|16761310 - gi\|16761310\|ref\|NP_456927.1\| hypothetical protein STY2618 [Salmonella enterica subsp. enterica serov... YFCN_SALTY - UPF0115 protein YfcN OS=Salmonella typhimurium (strain LT2 / SGSC1412 / ATCC 700720) GN=yfcN PE=3 SV... gi\|238912335 - gi\|238912335\|ref\|ZP_04656172.1\| hypothetical protein SentesTe_14546 [Salmonella enterica subsp. ente... gi\|29136619, gi\|... - gi\|29140994\|ref\|NP_804336.1\| hypothetical protein t0478 [Salmonella enterica subsp. enterica serovar... gi\|213426188 - gi\|213426188\|ref\|ZP_03358938.1\| hypothetical protein SentesTyphi_11459 [Salmonella enterica subsp. e... gi\|213160945 - gi\|213160945\|ref\|ZP_03346655.1\| hypothetical protein Salmoneentericaenterica_13203 [Salmonella enter... YFCN_SALTY - UPF0115 protein yfcN OS=Salmonella typhimurium GN=yfcN PE=3 SV=1 YFCN_SALPC - UPF0115 protein YfcN OS=Salmonella paratyphi C (strain RKS4594) GN=yfcN PE=3 SV=1 YFCN_SALTI - UPF0115 protein yfcN OS=Salmonella typhi GN=yfcN PE=3 SV=1 gi\|213582767 - gi\|213582767\|ref\|ZP_03364593.1\| hypothetical protein SentesTyph_16798 [Salmonella enterica subsp. en... gi\|204929171, gi... - gi\|204929171\|ref\|ZP_03220314.1\| Smr domain protein [Salmonella enterica subsp. enterica serovar Javi... gi\|199603881, gi... - gi\|200386783\|ref\|ZP_03213395.1\| Smr domain protein [Salmonella enterica subsp. enterica serovar Virc... YFCN_SALEP - UPF0115 protein YfcN OS=Salmonella enteritidis PT4 (strain P125109) GN=yfcN PE=3 SV=1 YFCN_SALG2 - UPF0115 protein YfcN OS=Salmonella gallinarum (strain 287/91 / NCTC 13346) GN=yfcN PE=3 SV=1 YFCN_SALA4 - UPF0115 protein YfcN OS=Salmonella agona (strain SL483) GN=yfcN PE=3 SV=1 YFCN_SALSV - UPF0115 protein YfcN OS=Salmonella schwarzengrund (strain CVM19633) GN=yfcN PE=3 SV=1 YFCN_SALDC - UPF0115 protein YfcN OS=Salmonella dublin (strain CT_02021853) GN=yfcN PE=3 SV=1 gi\|197243062, gi... - gi\|197264807\|ref\|ZP_03164881.1\| Smr domain protein [Salmonella enterica subsp. enterica serovar Sain...	209.0	[0..1]	[183..1]
gi\|253974241, gi... - gi\|254162340\|ref\|YP_003045448.1\| hypothetical protein ECB_02256 [Escherichia coli B str. REL606], gi... gi\|253978408, gi... - gi\|254289101\|ref\|YP_003054849.1\| hypothetical protein ECD_02256 [Escherichia coli BL21(DE3)], gi\|253... YFCN_ECOSM - UPF0115 protein YfcN OS=Escherichia coli (strain SMS-3-5 / SECEC) GN=yfcN PE=3 SV=1 YFCN_ECOLU - UPF0115 protein YfcN OS=Escherichia coli O17:K52:H18 (strain UMN026 / ExPEC) GN=yfcN PE=3 SV=1 YFCN_ECOL5 - UPF0115 protein YfcN OS=Escherichia coli O6:K15:H31 (strain 536 / UPEC) GN=yfcN PE=3 SV=1 gi\|75243142 - gi\|75243142\|ref\|ZP_00726848.1\| COG2840: Uncharacterized protein conserved in bacteria [Escherichia c... gi\|194424990, gi... - gi\|83588355\|ref\|ZP_00926980.1\| COG2840: Uncharacterized protein conserved in bacteria [Escherichia c... gi\|251785691, gi... - gi\|251785691\|ref\|YP_002999995.1\| hypothetical protein B21_02216 [Escherichia coli BL21], gi\|24237796...	209.0	[0..1]	[183..1]
gi\|188494034, gi... - gi\|75515696\|ref\|ZP_00737831.1\| COG2840: Uncharacterized protein conserved in bacteria [Escherichia c...	209.0	[0..1]	[183..1]
gi\|25355657 - gi\|25355657\|pir\|\|H85874 hypothetical protein Z3594 [imported] - Escherichia coli (strain O157:H7, s... gi\|15802878, gi\|... - gi\|15802878\|ref\|NP_288905.1\| hypothetical protein Z3594 [Escherichia coli O157:H7 EDL933], gi\|125166...	208.0	[0..1]	[183..1]
YFCN_SALPK - UPF0115 protein YfcN OS=Salmonella paratyphi A (strain AKU_12601) GN=yfcN PE=3 SV=1 YFCN_SALPA - UPF0115 protein yfcN OS=Salmonella paratyphi A GN=yfcN PE=3 SV=1 YFCN_SALPA - UPF0115 protein YfcN OS=Salmonella paratyphi A (strain ATCC 9150 / SARB42) GN=yfcN PE=3 SV=1	208.0	[0..1]	[183..1]
gi\|145210985, gi... - gi\|145599289\|ref\|YP_001163365.1\| hypothetical protein YPDSF_2011 [Yersinia pestis Pestoides F], gi\|1... Q668V3\|Q668V3_YERPS - Putative uncharacterized protein - Yersinia pseudotuberculosis gi\|77635296 - gi\|77635296\|ref\|ZP_00797382.1\| COG2840: Uncharacterized protein conserved in bacteria [Yersinia pest... gi\|51596953, gi\|... - gi\|51596953\|ref\|YP_071144.1\| hypothetical protein YPTB2634 [Yersinia pseudotuberculosis IP 32953], g... gi\|45437067, gi\|... - gi\|45442203\|ref\|NP_993742.1\| hypothetical protein YP_2414 [Yersinia pestis biovar Microtus str. 9100... gi\|21958372, gi\|... - gi\|22125478\|ref\|NP_668901.1\| hypothetical protein y1583 [Yersinia pestis KIM], gi\|21958372\|gb\|AAM851... gi\|165992527, gi... - gi\|166008145\|ref\|ZP_02229043.1\| Smr domain protein [Yersinia pestis biovar Antiqua str. E1979001], g... gi\|166204561, gi... - gi\|166214205\|ref\|ZP_02240240.1\| Smr domain protein [Yersinia pestis biovar Antiqua str. B42003004], ... gi\|167052195, gi... - gi\|167399691\|ref\|ZP_02305215.1\| Smr domain protein [Yersinia pestis biovar Antiqua str. UG05-0454], ... gi\|167421342, gi... - gi\|167421342\|ref\|ZP_02313095.1\| Smr domain protein [Yersinia pestis biovar Orientalis str. MG05-1020... gi\|167424566, gi... - gi\|167424566\|ref\|ZP_02316319.1\| Smr domain protein [Yersinia pestis biovar Mediaevalis str. K1973002... gi\|167469288 - gi\|167469288\|ref\|ZP_02333992.1\| hypothetical protein YpesF_15679 [Yersinia pestis FV-1] gi\|169750287, gi... - gi\|170023753\|ref\|YP_001720258.1\| hypothetical protein YPK_1512 [Yersinia pseudotuberculosis YPIII], ... gi\|186896034, gi... - gi\|186896034\|ref\|YP_001873146.1\| hypothetical protein YPTS_2729 [Yersinia pseudotuberculosis PB1/+],... gi\|117673091, gi... - gi\|77629682\|ref\|ZP_00792268.1\| COG2840: Uncharacterized protein conserved in bacteria [Yersinia pseu... gi\|165937023, gi... - gi\|89103114\|ref\|ZP_01175706.1\| COG2840: Uncharacterized protein conserved in bacteria [Yersinia pest... gi\|108808089, gi... - gi\|108808089\|ref\|YP_652005.1\| hypothetical protein YPA_2094 [Yersinia pestis Antiqua], gi\|108780002\|... gi\|108776007, gi... - gi\|108812359\|ref\|YP_648126.1\| hypothetical protein YPN_2197 [Yersinia pestis Nepal516], gi\|108776007... gi\|165925386, gi... - gi\|165925386\|ref\|ZP_02221218.1\| Smr domain protein [Yersinia pestis biovar Orientalis str. F1991016]...	201.0	[0..1]	[167..28]
gi\|77975542, gi\|... - gi\|77975542\|ref\|ZP_00831077.1\| COG2840: Uncharacterized protein conserved in bacteria [Yersinia fred...	199.0	[0..1]	[176..1]

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Predicted Domain #1

Region A:
Residues: [1-92]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKKKTTLSEE DQALFRQLMA GTRKIKQDTI VHRPQRKKIS EVPVKRLIQE QADASHYFSD  60
   61 EFQPLLNTEG PVKYVRPDVS HFEAKKLRRG DY

[Run NCBI BLAST on this sequence.]

Detection Method:

deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #2

Region A:
Residues: [93-183]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 SPELFLDLHG LTQLQAKQEL GALIAACRRE HVFCACVMHG HGKHILKQQT PLWLAQHPHV  60
   61 MAFHQAPKEY GGDAALLVLI EVEEWLPPEL P

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	9.154902
Match:	2d9iA
Description:	No description for 2d9iA was found.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits