YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|89107609, gi\|...
Organism:	Escherichia coli str. K-12 substr. W3110
Length:	348 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|89107609, gi|....

Description	E-value	Query Range	Subject Range
gi\|193065586, gi... - gi\|75256342\|ref\|ZP_00728012.1\| COG1085: Galactose-1-phosphate uridylyltransferase [Escherichia coli ... gi\|75209073, gi\|... - gi\|75209073\|ref\|ZP_00709331.1\| COG1085: Galactose-1-phosphate uridylyltransferase [Escherichia coli ...	422.0	[0..1]	[348..1]
gi\|110614171, gi... - gi\|110804623\|ref\|YP_688143.1\| galactose-1-phosphate uridylyltransferase [Shigella flexneri 5 str. 84... gi\|74311276, gi\|... - gi\|74311276\|ref\|YP_309695.1\| galactose-1-phosphate uridylyltransferase [Shigella sonnei Ss046], gi\|7...	421.0	[0..1]	[348..1]
gi\|194416722, gi... - gi\|83568960\|ref\|ZP_00920425.1\| COG1085: Galactose-1-phosphate uridylyltransferase [Shigella dysenter... gi\|218426106, gi... - gi\|218688542\|ref\|YP_002396754.1\| galactose-1-phosphate uridylyltransferase [Escherichia coli ED1a], ...	420.0	[0..1]	[348..1]
gi\|91071360, gi\|... - gi\|91209786\|ref\|YP_539772.1\| galactose-1-phosphate uridylyltransferase [Escherichia coli UTI89], gi\|... gi\|218364433, gi... - gi\|218557664\|ref\|YP_002390577.1\| galactose-1-phosphate uridylyltransferase [Escherichia coli S88], g... gi\|115512066, gi... - gi\|117622942\|ref\|YP_851855.1\| galactose-1-phosphate uridylyltransferase [Escherichia coli APEC O1], ... gi\|226898496, gi... - gi\|237707286\|ref\|ZP_04537767.1\| galactose-1-phosphate uridylyltransferase [Escherichia sp. 3_2_53FAA...	420.0	[0..1]	[348..1]
gi\|75237094, gi\|... - gi\|75237094\|ref\|ZP_00721148.1\| COG1085: Galactose-1-phosphate uridylyltransferase [Escherichia coli ... gi\|227884281, gi... - gi\|227884281\|ref\|ZP_04002086.1\| galactose-1-phosphate uridylyltransferase [Escherichia coli 83972], ... gi\|26107123, gi\|... - gi\|26246724\|ref\|NP_752764.1\| galactose-1-phosphate uridylyltransferase [Escherichia coli CFT073], gi...	420.0	[0..1]	[348..1]
gi\|209918002, gi... - gi\|209918002\|ref\|YP_002292086.1\| galactose-1-phosphate uridylyltransferase [Escherichia coli SE11], ... gi\|218694175, gi... - gi\|218694175\|ref\|YP_002401842.1\| galactose-1-phosphate uridylyltransferase [Escherichia coli 55989],... gi\|75228375, gi\|... - gi\|75228375\|ref\|ZP_00715023.1\| COG1085: Galactose-1-phosphate uridylyltransferase [Escherichia coli ...	420.0	[0..1]	[348..1]
gi\|110640959, gi... - gi\|110640959\|ref\|YP_668687.1\| galactose-1-phosphate uridylyltransferase [Escherichia coli 536], gi\|1...	420.0	[0..1]	[348..1]
gi\|24050784, gi\|... - gi\|24111973\|ref\|NP_706483.1\| galactose-1-phosphate uridylyltransferase [Shigella flexneri 2a str. 30... gi\|30062086, gi\|... - gi\|30062086\|ref\|NP_836257.1\| galactose-1-phosphate uridylyltransferase [Shigella flexneri 2a str. 24...	418.0	[0..1]	[348..1]
gi\|2624639 - gi\|2624639\|pdb\|1HXQ\|A Chain A, The Structure Of Nucleotidylated Galactose-1-Phosphate Uridylyltransf...	418.0	[0..1]	[348..1]
gi\|187768165, gi... - gi\|187768165\|gb\|EDU32009.1\| galactose-1-phosphate uridylyltransferase [Escherichia coli O157:H7 str.... gi\|189363592, gi... - gi\|189363592\|gb\|EDU82011.1\| galactose-1-phosphate uridylyltransferase [Escherichia coli O157:H7 str.... gi\|189366461, gi... - gi\|189366461\|gb\|EDU84877.1\| galactose-1-phosphate uridylyltransferase [Escherichia coli O157:H7 str.... gi\|189355835, gi... - gi\|189355835\|gb\|EDU74254.1\| galactose-1-phosphate uridylyltransferase [Escherichia coli O157:H7 str.... gi\|195936746 - gi\|195936746\|ref\|ZP_03082128.1\| galactose-1-phosphate uridylyltransferase [Escherichia coli O157:H7 ... gi\|254591309, gi... - gi\|254791909\|ref\|YP_003076746.1\| galactose-1-phosphate uridylyltransferase [Escherichia coli O157:H7... gi\|189376988, gi... - gi\|189376988\|gb\|EDU95404.1\| galactose-1-phosphate uridylyltransferase [Escherichia coli O157:H7 str.... gi\|189373047, gi... - gi\|189373047\|gb\|EDU91463.1\| galactose-1-phosphate uridylyltransferase [Escherichia coli O157:H7 str.... gi\|189002897, gi... - gi\|189002897\|gb\|EDU71883.1\| galactose-1-phosphate uridylyltransferase [Escherichia coli O157:H7 str.... gi\|15830040, gi\|... - gi\|15830040\|ref\|NP_308813.1\| galactose-1-phosphate uridylyltransferase [Escherichia coli O157:H7 str... gi\|188015534, gi... - gi\|188015534\|gb\|EDU53656.1\| galactose-1-phosphate uridylyltransferase [Escherichia coli O157:H7 str.... gi\|15830040, gi\|... - gi\|15830040\|ref\|NP_308813.1\| galactose-1-phosphate uridylyltransferase [Escherichia coli O157:H7], g... gi\|209776288, gi... - pir\|\|C85578 galactose-1-phosphate uridylyltransferase [imported] - Escherichia coli (strain O157:H7,... gi\|209159234, gi... - gi\|209397834\|ref\|YP_002269386.1\| galactose-1-phosphate uridylyltransferase [Escherichia coli O157:H7... gi\|15800467, gi\|... - gi\|15800467\|ref\|NP_286479.1\| galactose-1-phosphate uridylyltransferase [Escherichia coli O157:H7 EDL... gi\|208822708, gi... - gi\|208822708\|ref\|ZP_03263027.1\| galactose-1-phosphate uridylyltransferase [Escherichia coli O157:H7 ... gi\|208816042, gi... - gi\|208816042\|ref\|ZP_03257221.1\| galactose-1-phosphate uridylyltransferase [Escherichia coli O157:H7 ... gi\|208728057, gi... - gi\|208808256\|ref\|ZP_03250593.1\| galactose-1-phosphate uridylyltransferase [Escherichia coli O157:H7 ... gi\|217320872, gi... - gi\|217324651\|ref\|ZP_03440735.1\| galactose-1-phosphate uridylyltransferase [Escherichia coli O157:H7 ...	418.0	[0..1]	[348..1]

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Predicted Domain #1

Region A:
Residues: [1-348]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MTQFNPVDHP HRRYNPLTGQ WILVSPHRAK RPWQGAQETP AKQVLPAHDP DCFLCAGNVR  60
   61 VTGDKNPDYT GTYVFTNDFA ALMSDTPDAP ESHDPLMRCQ SARGTSRVIC FSPDHSKTLP 120
  121 ELSVAALTEI VKTWQEQTAE LGKTYPWVQV FENKGAAMGC SNPHPHGQIW ANSFLPNEAE 180
  181 REDRLQKEYF AEQKSPMLVD YVQRELADGS RTVVETEHWL AVVPYWAAWP FETLLLPKAH 240
  241 VLRITDLTDA QRSDLALALK KLTSRYDNLF QCSFPYSMGW HGAPFNGEEN QHWQLHAHFY 300
  301 PPLLRSATVR KFMVGYEMLA ETQRDLTAEQ AAERLRAVSD IHFRESGV

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	118.0
Match:	1hxqA
Description:	Galactose-1-phosphate uridylyltransferase
Matching Structure (courtesy of the PDB):

Predicted functions:

Term	Confidence	Notes
UDP-glucose:hexose-1-phosphate uridylyltransferase activity	3.48198730005073	bayes_pls_golite062009
uridylyltransferase activity	3.010722744037	bayes_pls_golite062009
binding	1.04488831222217	bayes_pls_golite062009
nucleic acid binding	0.724655038971066	bayes_pls_golite062009
UTP-monosaccharide-1-phosphate uridylyltransferase activity	0.709923893375206	bayes_pls_golite062009
hydrolase activity	0.244163480778763	bayes_pls_golite062009
catalytic activity	0.096119422680995	bayes_pls_golite062009
glucose binding	0.0395272923745802	bayes_pls_golite062009

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: