YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|94413642, gi\|...
Organism:	Pseudomonas aeruginosa PA7
Length:	118 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

[What does the above image mean?]

[Show Ginzu Version Information]

Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|94413642, gi|....

Description	E-value	Query Range	Subject Range
gi\|77460371, gi\|... - gi\|77460371\|ref\|YP_349878.1\| Type IV pilus assembly PilZ [Pseudomonas fluorescens Pf0-1], gi\|7738437...	219.0	[0..1]	[118..1]
gi\|49074504 - gi\|49074504\|gb\|AAT49408.1\| PA2960 [synthetic construct]	219.0	[0..1]	[118..1]
gi\|66044899, gi\|... - gi\|66044899\|ref\|YP_234740.1\| Type IV pilus assembly PilZ [Pseudomonas syringae pv. syringae B728a], ...	216.0	[0..1]	[118..1]
gi\|71735299, gi\|... - gi\|71735299\|ref\|YP_273891.1\| type IV pilus biogenesis protein PilZ [Pseudomonas syringae pv. phaseol...	214.0	[0..1]	[118..1]
tr\|Q87YH3\|Q87YH3... - Type IV pilus biogenesis protein PilZ OS=Pseudomonas syringae pv. tomato (strain DC3000) GN=pilZ PE=... gi\|28854228, gi\|... - gi\|28870979\|ref\|NP_793598.1\| type IV pilus biogenesis protein PilZ [Pseudomonas syringae pv. tomato ... gi\|213971680, gi... - gi\|213971680\|ref\|ZP_03399787.1\| type IV pilus biogenesis protein PilZ [Pseudomonas syringae pv. toma...	212.0	[0..1]	[118..1]
gi\|83633257, gi\|... - gi\|83645214\|ref\|YP_433649.1\| Tfp pilus assembly protein PilZ [Hahella chejuensis KCTC 2396], gi\|8363...	209.0	[0..3]	[118..1]
gi\|67154547 - gi\|67154547\|ref\|ZP_00416292.1\| Type IV pilus assembly PilZ [Azotobacter vinelandii AvOP] gi\|67154547, gi\|... - gi\|67154547\|ref\|ZP_00416292.1\| Type IV pilus assembly PilZ [Azotobacter vinelandii AvOP], gi\|6708868...	209.0	[0..1]	[118..1]
gi\|48860774, gi\|... - gi\|90021298\|ref\|YP_527125.1\| type 4 fimbrial biogenesis protein PilZ [Saccharophagus degradans 2-40]...	203.0	[0..6]	[118..5]
gi\|94499609, gi\|... - gi\|94499609\|ref\|ZP_01306146.1\| type 4 fimbrial biogenesis protein PilZ [Oceanobacter sp. RED65], gi\|...	201.0	[0..3]	[118..1]
gi\|77865570, gi\|... - gi\|77955538\|ref\|ZP_00819899.1\| type 4 fimbrial biogenesis protein PilZ [Marinobacter aquaeolei VT8],...	199.0	[0..3]	[118..1]

Back

Predicted Domain #1

Region A:
Residues: [1-118]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSLPPNLGPR NGILSLTIKD KSVLYAAYMP FIRNGGLFIP TNKNYKLGDE VFMLLNLMEE  60
   61 PEKIPVAGKV VWITPKGAQG NRAAGIGVQF NDGDNTARNK IETYLAGALK SDRPTHTM

[Run NCBI BLAST on this sequence.]

Detection Method:	FFAS03
Confidence:	3.79
Match:	1ywuA
Description:	Solution NMR structure of Pseudomonas Aeruginosa protein PA4608. Northeast Structural Genomics target PaT7
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits