YRC Public Data Repository - Protein Structure Prediction

Protein:	UBID_ECOUT
Organism:	Escherichia coli UTI89
Length:	497 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for UBID_ECOUT.

Description	E-value	Query Range	Subject Range
gi\|194422450, gi... - gi\|83585898\|ref\|ZP_00924537.1\| COG0043: 3-polyprenyl-4-hydroxybenzoate decarboxylase and related dec... gi\|251787113, gi... - gi\|251787113\|ref\|YP_003001417.1\| hypothetical protein B21_03683 [Escherichia coli BL21], gi\|24237938... gi\|253975701, gi... - gi\|254163800\|ref\|YP_003046908.1\| 3-octaprenyl-4-hydroxybenzoate decarboxylase [Escherichia coli B st... gi\|253775518, gi... - gi\|254290550\|ref\|YP_003056298.1\| 3-octaprenyl-4-hydroxybenzoate decarboxylase [Escherichia coli BL21...	779.0	[0..1]	[497..1]
UBID_SHIFL - 3-octaprenyl-4-hydroxybenzoate carboxy-lyase OS=Shigella flexneri GN=ubiD PE=3 SV=1 gi\|24054409, gi\|... - gi\|24115137\|ref\|NP_709647.1\| 3-octaprenyl-4-hydroxybenzoate decarboxylase [Shigella flexneri 2a str....	779.0	[0..1]	[497..1]
gi\|75512604, gi\|... - gi\|75512604\|ref\|ZP_00735116.1\| COG0043: 3-polyprenyl-4-hydroxybenzoate decarboxylase and related dec... gi\|157163317, gi... - gi\|75197724\|ref\|ZP_00707794.1\| COG0043: 3-polyprenyl-4-hydroxybenzoate decarboxylase and related dec...	779.0	[0..1]	[497..1]
gi\|30043122, gi\|... - gi\|30064862\|ref\|NP_839033.1\| 3-octaprenyl-4-hydroxybenzoate decarboxylase [Shigella flexneri 2a str....	778.0	[0..1]	[497..1]
gi\|110617015, gi... - gi\|110807467\|ref\|YP_690987.1\| 3-octaprenyl-4-hydroxybenzoate decarboxylase [Shigella flexneri 5 str....	778.0	[0..1]	[497..1]
gi\|194434032, gi... - gi\|83569323\|ref\|ZP_00920778.1\| COG0043: 3-polyprenyl-4-hydroxybenzoate decarboxylase and related dec...	777.0	[0..1]	[497..1]
gi\|192926645, gi... - gi\|75256235\|ref\|ZP_00727913.1\| COG0043: 3-polyprenyl-4-hydroxybenzoate decarboxylase and related dec...	776.0	[0..1]	[497..1]
gi\|209158495, gi... - gi\|209397095\|ref\|YP_002273360.1\| 3-octaprenyl-4-hydroxybenzoate carboxy-lyase [Escherichia coli O157... gi\|217326126, gi... - gi\|217326126\|ref\|ZP_03442210.1\| 3-octaprenyl-4-hydroxybenzoate carboxy-lyase [Escherichia coli O157:... gi\|195938133 - gi\|195938133\|ref\|ZP_03083515.1\| 3-octaprenyl-4-hydroxybenzoate decarboxylase [Escherichia coli O157:... UBID_ECO57 - 3-octaprenyl-4-hydroxybenzoate carboxy-lyase OS=Escherichia coli O157:H7 GN=ubiD PE=3 SV=1 gi\|208807339, gi... - gi\|208807339\|ref\|ZP_03249676.1\| 3-octaprenyl-4-hydroxybenzoate carboxy-lyase [Escherichia coli O157:... gi\|208814111, gi... - gi\|208814111\|ref\|ZP_03255440.1\| 3-octaprenyl-4-hydroxybenzoate carboxy-lyase [Escherichia coli O157:... gi\|208818827, gi... - gi\|208818827\|ref\|ZP_03259147.1\| 3-octaprenyl-4-hydroxybenzoate carboxy-lyase [Escherichia coli O157:... gi\|12518721, gi\|... - gi\|15804433\|ref\|NP_290473.1\| 3-octaprenyl-4-hydroxybenzoate decarboxylase [Escherichia coli O157:H7 ... gi\|168775602, gi... - gi\|187768877\|gb\|EDU32721.1\| 3-octaprenyl-4-hydroxybenzoate carboxy-lyase [Escherichia coli O157:H7 s... gi\|209752992, gi... - pir\|\|A86072 probable oxidoreductase yigC [imported] - Escherichia coli (strain O157:H7, substrain E... gi\|189001542, gi... - gi\|189001542\|gb\|EDU70528.1\| 3-octaprenyl-4-hydroxybenzoate carboxy-lyase [Escherichia coli O157:H7 s... gi\|189373384, gi... - gi\|189373384\|gb\|EDU91800.1\| 3-octaprenyl-4-hydroxybenzoate carboxy-lyase [Escherichia coli O157:H7 s... gi\|189376658, gi... - gi\|189376658\|gb\|EDU95074.1\| 3-octaprenyl-4-hydroxybenzoate carboxy-lyase [Escherichia coli O157:H7 s... gi\|188015451, gi... - gi\|188015451\|gb\|EDU53573.1\| 3-octaprenyl-4-hydroxybenzoate carboxy-lyase [Escherichia coli O157:H7 s... gi\|189359300, gi... - gi\|189359300\|gb\|EDU77719.1\| 3-octaprenyl-4-hydroxybenzoate carboxy-lyase [Escherichia coli O157:H7 s... gi\|189365945, gi... - gi\|189365945\|gb\|EDU84361.1\| 3-octaprenyl-4-hydroxybenzoate carboxy-lyase [Escherichia coli O157:H7 s... gi\|168768128, gi... - gi\|189362604\|gb\|EDU81023.1\| 3-octaprenyl-4-hydroxybenzoate carboxy-lyase [Escherichia coli O157:H7 s... gi\|13364247, gi\|... - gi\|15834025\|ref\|NP_312798.1\| 3-octaprenyl-4-hydroxybenzoate decarboxylase [Escherichia coli O157:H7 ... gi\|254795839, gi... - gi\|254795839\|ref\|YP_003080676.1\| 3-octaprenyl-4-hydroxybenzoate decarboxylase [Escherichia coli O157...	774.0	[0..1]	[497..1]
gi\|75230802, gi\|... - gi\|75230802\|ref\|ZP_00717265.1\| COG0043: 3-polyprenyl-4-hydroxybenzoate decarboxylase and related dec...	774.0	[0..1]	[497..1]
UBID_SHIBS - 3-octaprenyl-4-hydroxybenzoate carboxy-lyase OS=Shigella boydii serotype 4 (strain Sb227) GN=ubiD PE... gi\|75177807, gi\|... - gi\|75177807\|ref\|ZP_00697872.1\| COG0043: 3-polyprenyl-4-hydroxybenzoate decarboxylase and related dec...	773.0	[0..1]	[497..1]

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Predicted Domain #1

Region A:
Residues: [1-497]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MDAMKYNDLR DFLTLLEQQG ELKRITLPVD PHLEITEIAD RTLRAGGPAL LFENPKGYSM  60
   61 PVLCNLFGTP KRVAMGMGQE DVSALREVGK LLAFLKEPEP PKGFRDLFDK LPQFKQVLNM 120
  121 PTKRLRGAPC QQKIVSGDDV DLNRIPIMTC WPEDAAPLIT WGLTVTRGPH KERQNLGIYR 180
  181 QQLIGKNKLI MRWLSHRGGA LDYQEWCAAH PGERFPVSVA LGADPATILG AVTPVPDTLS 240
  241 EYAFAGLLRG TKTEVVKCIS NDLEVPASAE IVLEGYIEQG ETAPEGPYGD HTGYYNEVDS 300
  301 FPVFTVTHIT QREDAIYHST YTGRPPDEPA VLGVALNEVF VPILQKQFPE IVDFYLPPEG 360
  361 CSYRLAVVTI KKQYAGHAKR VMMGVWSFLR QFMYTKFVIV CDDDVNARDW NDVIWAITTR 420
  421 MDPARDTVLV ENTPIDYLDF ASPVSGLGSK MGLDATNKWP GETQREWGRP IKKDPDVVAH 480
  481 IDAIWDELAI FNNGKSA

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	1000.0
Match:	2idbA
Description:	No description for 2idbA was found.

Predicted functions:

Term	Confidence	Notes
3-octaprenyl-4-hydroxybenzoate carboxy-lyase activity	4.16287058810454	bayes_pls_golite062009
oxidoreductase activity, acting on the CH-NH2 group of donors, oxygen as acceptor	0.806130882178534	bayes_pls_golite062009
catalytic activity	0.660906721832294	bayes_pls_golite062009

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: