YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|110616606, gi...
Organism:	Shigella flexneri 5 str. 8401
Length:	211 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|110616606, gi....

Description	E-value	Query Range	Subject Range
gi\|82778506, gi\|... - gi\|82778506\|ref\|YP_404855.1\| hypothetical protein SDY_3373 [Shigella dysenteriae Sd197], gi\|81242654... gi\|13363544, gi\|... - gi\|15833325\|ref\|NP_312098.1\| hypothetical protein ECs4071 [Escherichia coli O157:H7], gi\|13363544\|db... gi\|209758120, gi... - pir\|\|B85983 hypothetical protein yrbC [imported] - Escherichia coli (strain O157:H7, substrain EDL9... gi\|15803732, gi\|... - gi\|15803732\|ref\|NP_289766.1\| hypothetical protein Z4555 [Escherichia coli O157:H7 EDL933], gi\|125178... gi\|13363544, gi\|... - gi\|15833325\|ref\|NP_312098.1\| hypothetical protein ECs4071 [Escherichia coli O157:H7 str. Sakai], gi\|... gi\|110345024, gi... - gi\|110643432\|ref\|YP_671162.1\| hypothetical protein ECP_3279 [Escherichia coli 536], gi\|110345024\|gb\|... gi\|170682535, gi... - gi\|170682535\|ref\|YP_001745464.1\| toluene tolerance protein Ttg2D [Escherichia coli SMS-3-5], gi\|1705... gi\|191174484, gi... - gi\|191174484\|ref\|ZP_03035984.1\| toluene tolerance protein Ttg2D [Escherichia coli F11], gi\|190905239... gi\|195940048 - gi\|195940048\|ref\|ZP_03085430.1\| hypothetical protein EscherichcoliO157_27255 [Escherichia coli O157:... gi\|208806604, gi... - gi\|208806604\|ref\|ZP_03248941.1\| toluene tolerance protein Ttg2D [Escherichia coli O157:H7 str. EC420... gi\|168777247, gi... - gi\|187767459\|gb\|EDU31303.1\| toluene tolerance protein Ttg2D [Escherichia coli O157:H7 str. EC4196], ... gi\|189001078, gi... - gi\|189001078\|gb\|EDU70064.1\| toluene tolerance protein Ttg2D [Escherichia coli O157:H7 str. EC4076], ... gi\|189373828, gi... - gi\|189373828\|gb\|EDU92244.1\| toluene tolerance protein Ttg2D [Escherichia coli O157:H7 str. EC869], g... gi\|168800906, gi... - gi\|189376815\|gb\|EDU95231.1\| toluene tolerance protein Ttg2D [Escherichia coli O157:H7 str. EC508], g... gi\|168751598, gi... - gi\|188014387\|gb\|EDU52509.1\| toluene tolerance protein Ttg2D [Escherichia coli O157:H7 str. EC4113], ... gi\|189358716, gi... - gi\|189358716\|gb\|EDU77135.1\| toluene tolerance protein Ttg2D [Escherichia coli O157:H7 str. EC4401], ... gi\|189366136, gi... - gi\|189366136\|gb\|EDU84552.1\| toluene tolerance protein Ttg2D [Escherichia coli O157:H7 str. EC4501], ... gi\|189361738, gi... - gi\|189361738\|gb\|EDU80157.1\| toluene tolerance protein Ttg2D [Escherichia coli O157:H7 str. EC4486], ... gi\|217326785, gi... - gi\|217326785\|ref\|ZP_03442868.1\| toluene tolerance protein Ttg2D [Escherichia coli O157:H7 str. TW145... gi\|218691482, gi... - gi\|218691482\|ref\|YP_002399694.1\| toluene transporter subunit: membrane component of ABC superfamily ... gi\|218701961, gi... - gi\|218701961\|ref\|YP_002409590.1\| toluene transporter subunit: membrane component of ABC superfamily ... gi\|218706812, gi... - gi\|218706812\|ref\|YP_002414331.1\| toluene transporter subunit: membrane component of ABC superfamily ... gi\|208812149, gi... - gi\|208812149\|ref\|ZP_03253478.1\| toluene tolerance protein Ttg2D [Escherichia coli O157:H7 str. EC404... gi\|208741508, gi... - gi\|208821385\|ref\|ZP_03261705.1\| toluene tolerance protein Ttg2D [Escherichia coli O157:H7 str. EC404... gi\|209158090, gi... - gi\|209396690\|ref\|YP_002272662.1\| toluene tolerance protein Ttg2D [Escherichia coli O157:H7 str. EC41... gi\|215488508, gi... - gi\|215488508\|ref\|YP_002330939.1\| predicted ABC-type organic solvent transporter [Escherichia coli O1... gi\|254795141, gi... - gi\|254795141\|ref\|YP_003079978.1\| predicted ABC-type organic solvent transporter [Escherichia coli O1...	253.0	[0..1]	[211..1]
gi\|227835309, gi... - gi\|227887913\|ref\|ZP_04005718.1\| ABC superfamily ATP binding cassette transporter, binding protein [E... gi\|26249778, gi\|... - gi\|26249778\|ref\|NP_755818.1\| hypothetical protein c3952 [Escherichia coli CFT073], gi\|26110206\|gb\|AA...	253.0	[0..1]	[211..1]
gi\|25302778, gi\|... - gi\|25302778\|pir\|\|AE0904 probable exported protein [imported] - Salmonella enterica subsp. enterica s... gi\|16762072 - gi\|16762072\|ref\|NP_457689.1\| hypothetical protein STY3489 [Salmonella enterica subsp. enterica serov... gi\|16766605, gi\|... - gi\|16766605\|ref\|NP_462220.1\| putative transport protein [Salmonella typhimurium LT2], gi\|16421867\|gb... gi\|29139196, gi\|... - gi\|29143561\|ref\|NP_806903.1\| hypothetical protein t3227 [Salmonella enterica subsp. enterica serovar... gi\|205337738, gi... - gi\|205337738\|gb\|EDZ24502.1\| toluene tolerance protein Ttg2D [Salmonella enterica subsp. enterica ser... gi\|205348421, gi... - gi\|205348421\|gb\|EDZ35052.1\| toluene tolerance protein Ttg2D [Salmonella enterica subsp. enterica ser... gi\|238910104 - gi\|238910104\|ref\|ZP_04653941.1\| possible exported protein [Salmonella enterica subsp. enterica serov... gi\|195633182, gi... - gi\|195633182\|gb\|EDX51596.1\| toluene tolerance protein Ttg2D [Salmonella enterica subsp. enterica ser... gi\|168819620, gi... - gi\|205343331\|gb\|EDZ30095.1\| toluene tolerance protein Ttg2D [Salmonella enterica subsp. enterica ser... gi\|161616320, gi... - gi\|161616320\|ref\|YP_001590285.1\| hypothetical protein SPAB_04128 [Salmonella enterica subsp. enteric... gi\|167994503, gi... - gi\|205327639\|gb\|EDZ14403.1\| toluene tolerance protein Ttg2D [Salmonella enterica subsp. enterica ser... gi\|168238012, gi... - gi\|197289130\|gb\|EDY28499.1\| toluene tolerance protein Ttg2D [Salmonella enterica subsp. enterica ser... gi\|213584875 - gi\|213584875\|ref\|ZP_03366701.1\| possible exported protein [Salmonella enterica subsp. enterica serov... gi\|213646983 - gi\|213646983\|ref\|ZP_03377036.1\| possible exported protein [Salmonella enterica subsp. enterica serov... gi\|214000946 - gi\|214000946\|ref\|ZP_03411681.1\| possible exported protein [Salmonella enterica subsp. enterica serov... gi\|224585107, gi... - gi\|224585107\|ref\|YP_002638906.1\| possible exported protein [Salmonella enterica subsp. enterica sero... gi\|204931136, gi... - gi\|204931136\|ref\|ZP_03221930.1\| toluene tolerance protein Ttg2D [Salmonella enterica subsp. enterica... gi\|205354211, gi... - gi\|205354211\|ref\|YP_002228012.1\| possible exported protein [Salmonella enterica subsp. enterica sero... gi\|206710361, gi... - gi\|207858558\|ref\|YP_002245209.1\| possible exported protein [Salmonella enterica subsp. enterica sero... gi\|213426647 - gi\|213426647\|ref\|ZP_03359397.1\| possible exported protein [Salmonella enterica subsp. enterica serov... gi\|197261892, gi... - gi\|197261892\|ref\|ZP_03161966.1\| toluene tolerance protein Ttg2D [Salmonella enterica subsp. enterica... gi\|197095646, gi... - gi\|197364169\|ref\|YP_002143806.1\| possible exported protein [Salmonella enterica subsp. enterica sero... gi\|197937759, gi... - gi\|198243243\|ref\|YP_002217281.1\| toluene tolerance protein Ttg2D [Salmonella enterica subsp. enteric... gi\|199603962, gi... - gi\|200386864\|ref\|ZP_03213476.1\| toluene tolerance protein Ttg2D [Salmonella enterica subsp. enterica... gi\|194402545, gi... - gi\|194443882\|ref\|YP_002042568.1\| toluene tolerance protein Ttg2D [Salmonella enterica subsp. enteric... gi\|194408683, gi... - gi\|194450379\|ref\|YP_002047339.1\| toluene tolerance protein Ttg2D [Salmonella enterica subsp. enteric... lcl\|NC_016856.1_... - [gene=yrbC] [protein=putative transport protein] [protein_id=YP_005239490.1] [location=complement(34... gi\|56415239, gi\|... - gi\|56415239\|ref\|YP_152314.1\| hypothetical protein SPA3177 [Salmonella enterica subsp. enterica serov... gi\|194712130, gi... - gi\|194736628\|ref\|YP_002116260.1\| toluene tolerance protein Ttg2D [Salmonella enterica subsp. enteric... gi\|197248552, gi... - gi\|197248552\|ref\|YP_002148235.1\| toluene tolerance protein Ttg2D [Salmonella enterica subsp. enteric...	251.0	[0..1]	[211..1]
gi\|237706056, gi... - gi\|237706056\|ref\|ZP_04536537.1\| conserved hypothetical protein [Escherichia sp. 3_2_53FAA], gi\|22689... gi\|218560262, gi... - gi\|218560262\|ref\|YP_002393175.1\| toluene transporter subunit: membrane component of ABC superfamily ... gi\|91212617, gi\|... - gi\|91212617\|ref\|YP_542603.1\| hypothetical protein UTI89_C3628 [Escherichia coli UTI89], gi\|91074191\|... gi\|115514608, gi... - gi\|117625484\|ref\|YP_858807.1\| hypothetical protein APECO1_3243 [Escherichia coli APEC O1], gi\|115514...	251.0	[0..1]	[211..1]
gi\|62181818, gi\|... - gi\|62181818\|ref\|YP_218235.1\| ABC transporter ATP-binding protein [Salmonella enterica subsp. enteric...	250.0	[0..1]	[211..1]
gi\|75234894 - gi\|75234894\|ref\|ZP_00719185.1\| COG2854: ABC-type transport system involved in resistance to organic ...	244.0	[0..6]	[211..1]
gi\|75236227 - gi\|75236227\|ref\|ZP_00720337.1\| COG2854: ABC-type transport system involved in resistance to organic ...	243.0	[0..6]	[211..1]
gi\|37527883, gi\|... - gi\|37527883\|ref\|NP_931228.1\| hypothetical protein plu4031 [Photorhabdus luminescens subsp. laumondii...	243.0	[0..1]	[211..1]
gi\|50119258, gi\|... - gi\|50119258\|ref\|YP_048425.1\| hypothetical protein ECA0298 [Pectobacterium atrosepticum SCRI1043], gi...	239.0	[0..1]	[211..1]
gi\|85058186, gi\|... - gi\|85058186\|ref\|YP_453888.1\| hypothetical protein SG0208 [Sodalis glossinidius str. 'morsitans'], gi...	236.0	[0..1]	[211..1]

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Predicted Domain #1

Region A:
Residues: [1-211]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MFKRLMMVAL LVIAPLSAAT AADQTNPYKL MDEAAQKTFD RLKNEQPQIR ANPDYLRTIV  60
   61 DQELLPYVQV KYAGALVLGQ YYKSATPAQR EAYFAAFREY LKQAYGQALA MYHGQTYQIA 120
  121 PEQPLGDKTI VPIRVTIIDP NGRPPVRLDF QWRKNSQTGN WQAYDMIAEG VSMITTKQNE 180
  181 WGTLLRTKGI DGLTAQLKSI SQQKITLEEK K

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	47.221849
Match:	2qguA
Description:	No description for 2qguA was found.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits