YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|110805270, gi...
Organism:	Shigella flexneri 5 str. 8401
Length:	218 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|110805270, gi....

Description	E-value	Query Range	Subject Range
gi\|81240772, gi\|... - gi\|82776624\|ref\|YP_402973.1\| hypothetical protein SDY_1335 [Shigella dysenteriae Sd197], gi\|81240772...	269.0	[0..1]	[218..1]
EG12967 - putative RNA binding protein / Predicted RNA binding protein; low abundance protein YCIO_ECOL6 - Uncharacterized protein YciO OS=Escherichia coli O6:H1 (strain CFT073 / ATCC 700928 / UPEC) GN=yciO ... EG12967 - putative RNA binding protein / Predicted RNA binding protein; low abundance protein YCIO_ECOLI - Protein yciO - Escherichia coli gi\|169755297, gi... - gi\|170020369\|ref\|YP_001725323.1\| hypothetical protein EcolC_2361 [Escherichia coli ATCC 8739], gi\|16... gi\|168758351, gi... - gi\|189354813\|gb\|EDU73232.1\| Sua5/YciO/YrdC/YwlC family protein [Escherichia coli O157:H7 str. EC4401... gi\|194416711, gi... - gi\|194435054\|ref\|ZP_03067293.1\| Sua5/YciO/YrdC/YwlC family protein [Shigella dysenteriae 1012], gi\|1... gi\|170080944, gi... - gi\|170080944\|ref\|YP_001730264.1\| hypothetical protein ECDH10B_1382 [Escherichia coli str. K-12 subst... gi\|75259378 - gi\|75259378\|ref\|ZP_00730697.1\| COG0009: Putative translation factor (SUA5) [Escherichia coli E22] gi\|124500586, gi... - gi\|124528354\|ref\|ZP_01699664.1\| Sua5/YciO/YrdC/YwlC family protein [Escherichia coli B], gi\|12450058... gi\|188495376, gi... - gi\|75515121\|ref\|ZP_00737325.1\| COG0009: Putative translation factor (SUA5) [Escherichia coli 53638],... YCIO_SHIFL - Uncharacterized protein YciO OS=Shigella flexneri GN=yciO PE=3 SV=1 gi\|85674890, gi\|... - gi\|89108113\|ref\|AP_001893.1\| hypothetical protein [Escherichia coli str. K-12 substr. W3110], gi\|856... gi\|38703956 - gi\|38703956\|ref\|NP_309866.2\| hypothetical protein ECs1839 [Escherichia coli O157:H7] YCIO_ECOL6 - Uncharacterized protein yciO OS=Escherichia coli O6 GN=yciO PE=3 SV=1 gi\|38703956 - gi\|38703956\|ref\|NP_309866.2\| hypothetical protein ECs1839 [Escherichia coli O157:H7 str. Sakai] gi\|83587404 - gi\|83587404\|ref\|ZP_00926032.1\| COG0009: Putative translation factor (SUA5) [Escherichia coli 101-1] gi\|218704790, gi... - gi\|218704790\|ref\|YP_002412309.1\| hypothetical protein ECUMN_1565 [Escherichia coli UMN026], gi\|21843... gi\|75179089, gi\|... - gi\|75179089\|ref\|ZP_00699107.1\| COG0009: Putative translation factor (SUA5) [Shigella boydii BS512], ... gi\|218369960, gi... - gi\|218699974\|ref\|YP_002407603.1\| hypothetical protein ECIAI39_1603 [Escherichia coli IAI39], gi\|2183... gi\|157155810, gi... - gi\|75190352\|ref\|ZP_00703619.1\| COG0009: Putative translation factor (SUA5) [Escherichia coli E24377A... gi\|157160772, gi... - gi\|75195415\|ref\|ZP_00705485.1\| COG0009: Putative translation factor (SUA5) [Escherichia coli HS], gi... gi\|75212705 - gi\|75212705\|ref\|ZP_00712703.1\| COG0009: Putative translation factor (SUA5) [Escherichia coli B171] gi\|110641496, gi... - gi\|110641496\|ref\|YP_669226.1\| hypothetical protein ECP_1314 [Escherichia coli 536], gi\|110343088\|gb\|... gi\|75230176, gi\|... - gi\|75230176\|ref\|ZP_00716677.1\| COG0009: Putative translation factor (SUA5) [Escherichia coli B7A], g... gi\|75235226, gi\|... - gi\|75235226\|ref\|ZP_00719463.1\| COG0009: Putative translation factor (SUA5) [Escherichia coli E110019... gi\|75242066 - gi\|75242066\|ref\|ZP_00725860.1\| COG0009: Putative translation factor (SUA5) [Escherichia coli F11] gi\|209918507, gi... - gi\|209918507\|ref\|YP_002292591.1\| hypothetical protein ECSE_1316 [Escherichia coli SE11], gi\|20991176... gi\|195939200 - gi\|195939200\|ref\|ZP_03084582.1\| hypothetical protein EscherichcoliO157_22736 [Escherichia coli O157:... gi\|218356583, gi... - gi\|218549042\|ref\|YP_002382833.1\| hypothetical protein EFER_1690 [Escherichia fergusonii ATCC 35469],... gi\|215264634, gi... - gi\|215486562\|ref\|YP_002328993.1\| hypothetical protein E2348C_1457 [Escherichia coli O127:H6 str. E23... gi\|218558252, gi... - gi\|218558252\|ref\|YP_002391165.1\| hypothetical protein ECS88_1401 [Escherichia coli S88], gi\|21836502... gi\|218360587, gi... - gi\|218553819\|ref\|YP_002386732.1\| hypothetical protein ECIAI1_1286 [Escherichia coli IAI1], gi\|218360... gi\|218694838, gi... - gi\|218694838\|ref\|YP_002402505.1\| hypothetical protein EC55989_1424 [Escherichia coli 55989], gi\|2183... gi\|218426821, gi... - gi\|218689257\|ref\|YP_002397469.1\| hypothetical protein ECED1_1473 [Escherichia coli ED1a], gi\|2184268... gi\|238900500, gi... - gi\|238900500\|ref\|YP_002926296.1\| hypothetical protein BWG_1096 [Escherichia coli BW2952], gi\|2388604... gi\|242377044, gi... - gi\|251784771\|ref\|YP_002999075.1\| hypothetical protein B21_01251 [Escherichia coli BL21], gi\|24237704... gi\|253773736, gi... - gi\|254288154\|ref\|YP_003053902.1\| hypothetical protein ECD_01241 [Escherichia coli BL21(DE3)], gi\|253... gi\|253973247, gi... - gi\|254161346\|ref\|YP_003044454.1\| hypothetical protein ECB_01241 [Escherichia coli B str. REL606], gi... gi\|254792855, gi... - gi\|254792855\|ref\|YP_003077692.1\| predicted RNA-binding protein [Escherichia coli O157:H7 str. TW1435...	263.0	[0..13]	[218..1]
gi\|213582659 - gi\|213582659\|ref\|ZP_03364485.1\| hypothetical protein SentesTyph_16218 [Salmonella enterica subsp. en... gi\|213424437 - gi\|213424437\|ref\|ZP_03357250.1\| hypothetical protein SentesTyphi_01480 [Salmonella enterica subsp. e... gi\|213421198 - gi\|213421198\|ref\|ZP_03354264.1\| hypothetical protein Salmonentericaenterica_27079 [Salmonella enteri... gi\|213163148 - gi\|213163148\|ref\|ZP_03348858.1\| hypothetical protein Salmoneentericaenterica_25228 [Salmonella enter... gi\|214002703 - gi\|214002703\|ref\|ZP_03413438.1\| hypothetical protein Salmonellentericaenterica_21224 [Salmonella ent... gi\|213855224 - gi\|213855224\|ref\|ZP_03383464.1\| hypothetical protein SentesT_14592 [Salmonella enterica subsp. enter... gi\|213649102 - gi\|213649102\|ref\|ZP_03379155.1\| hypothetical protein SentesTy_18553 [Salmonella enterica subsp. ente... gi\|213619078 - gi\|213619078\|ref\|ZP_03372904.1\| hypothetical protein SentesTyp_22475 [Salmonella enterica subsp. ent... gi\|197093755, gi... - gi\|197362278\|ref\|YP_002141915.1\| hypothetical protein SSPA1075 [Salmonella enterica subsp. enterica ... gi\|16502454, gi\|... - gi\|25319041\|pir\|\|AH0653 conserved hypothetical protein STY1330 [imported] - Salmonella enterica subs... gi\|197262994, gi... - gi\|197262994\|ref\|ZP_03163068.1\| Sua5/YciO/YrdC/YwlC family protein [Salmonella enterica subsp. enter... gi\|197214326, gi... - gi\|197250623\|ref\|YP_002146306.1\| Sua5/YciO/YrdC/YwlC family protein [Salmonella enterica subsp. ente... gi\|194710012, gi... - gi\|194734510\|ref\|YP_002114752.1\| Sua5/YciO/YrdC/YwlC family protein [Salmonella enterica subsp. ente... gi\|16760160 - gi\|16760160\|ref\|NP_455777.1\| hypothetical protein STY1330 [Salmonella enterica subsp. enterica serov... gi\|213023265 - gi\|213023265\|ref\|ZP_03337712.1\| hypothetical protein Salmonelentericaenterica_12025 [Salmonella ente... gi\|207856767, gi... - gi\|207856767\|ref\|YP_002243418.1\| hypothetical protein SEN1313 [Salmonella enterica subsp. enterica s... gi\|16765064, gi\|... - gi\|16765064\|ref\|NP_460679.1\| hypothetical protein STM1720 [Salmonella typhimurium LT2], gi\|16420250\|... gi\|204927841, gi... - gi\|204927841\|ref\|ZP_03219042.1\| Sua5/YciO/YrdC/YwlC family protein [Salmonella enterica subsp. enter... gi\|29137698, gi\|... - gi\|29142069\|ref\|NP_805411.1\| hypothetical protein t1633 [Salmonella enterica subsp. enterica serovar... gi\|199602604, gi... - gi\|200390159\|ref\|ZP_03216770.1\| Sua5/YciO/YrdC/YwlC family protein [Salmonella enterica subsp. enter... gi\|224583788, gi... - gi\|224583788\|ref\|YP_002637586.1\| hypothetical protein SPC_2009 [Salmonella enterica subsp. enterica ... gi\|56127611, gi\|... - gi\|56413354\|ref\|YP_150429.1\| hypothetical protein SPA1156 [Salmonella enterica subsp. enterica serov... gi\|195634421, gi... - gi\|195634421\|gb\|EDX52773.1\| Sua5/YciO/YrdC/YwlC family protein [Salmonella enterica subsp. enterica ... gi\|168260058, gi... - gi\|205350954\|gb\|EDZ37585.1\| Sua5/YciO/YrdC/YwlC family protein [Salmonella enterica subsp. enterica ... gi\|205339648, gi... - gi\|205339648\|gb\|EDZ26412.1\| Sua5/YciO/YrdC/YwlC family protein [Salmonella enterica subsp. enterica ... gi\|197289249, gi... - gi\|197289249\|gb\|EDY28616.1\| Sua5/YciO/YrdC/YwlC family protein [Salmonella enterica subsp. enterica ... gi\|238911888 - gi\|238911888\|ref\|ZP_04655725.1\| hypothetical protein SentesTe_12251 [Salmonella enterica subsp. ente... gi\|194456539, gi... - gi\|194470175\|ref\|ZP_03076159.1\| Sua5/YciO/YrdC/YwlC family protein [Salmonella enterica subsp. enter... gi\|194409708, gi... - gi\|194451404\|ref\|YP_002045767.1\| hypothetical protein SeHA_C1910 [Salmonella enterica subsp. enteric... gi\|194402218, gi... - gi\|194443555\|ref\|YP_002040974.1\| Sua5/YciO/YrdC/YwlC family protein [Salmonella enterica subsp. ente... gi\|168819543, gi... - gi\|205343598\|gb\|EDZ30362.1\| Sua5/YciO/YrdC/YwlC family protein [Salmonella enterica subsp. enterica ... gi\|205335546, gi... - gi\|205335546\|gb\|EDZ22310.1\| Sua5/YciO/YrdC/YwlC family protein [Salmonella enterica subsp. enterica ... gi\|205325048, gi... - gi\|205325048\|gb\|EDZ12887.1\| Sua5/YciO/YrdC/YwlC family protein [Salmonella enterica subsp. enterica ... gi\|161363154, gi... - gi\|161613790\|ref\|YP_001587755.1\| hypothetical protein SPAB_01524 [Salmonella enterica subsp. enteric...	261.0	[0..13]	[218..1]
gi\|116183762, gi... - gi\|75854266\|ref\|ZP_00761970.1\| COG0009: Putative translation factor (SUA5) [Vibrio sp. Ex25], gi\|254... gi\|91187788, gi\|... - gi\|91228667\|ref\|ZP_01262582.1\| putative translation factor [Vibrio alginolyticus 12G01], gi\|91187788...	260.0	[0..13]	[217..1]
gi\|36785780, gi\|... - gi\|37526349\|ref\|NP_929693.1\| hypothetical protein plu2456 [Photorhabdus luminescens subsp. laumondii...	259.0	[0..13]	[218..1]
gi\|82713698, gi\|... - gi\|82739203\|ref\|ZP_00902014.1\| Sua5/YciO/YrdC/YwlC [Pseudomonas putida F1], gi\|82713698\|gb\|EAP48801....	259.0	[0..1]	[218..1]
gi\|119775262, gi... - gi\|68547959\|ref\|ZP_00587482.1\| Sua5/YciO/YrdC/YwlC [Shewanella amazonensis SB2B], gi\|68514356\|gb\|EAN...	259.0	[0..13]	[218..1]
gi\|62180287, gi\|... - gi\|62180287\|ref\|YP_216704.1\| hypothetical protein SC1717 [Salmonella enterica subsp. enterica serova...	259.0	[0..13]	[217..1]
gi\|28806945, gi\|... - gi\|28898727\|ref\|NP_798332.1\| putative translation factor [Vibrio parahaemolyticus RIMD 2210633], gi\|... gi\|28806945 - gi\|28806945\|dbj\|BAC60216.1\| putative translation factor [Vibrio parahaemolyticus RIMD 2210633] gi\|153839753, gi... - gi\|153839753\|ref\|ZP_01992420.1\| Sua5/YciO/YrdC/YwlC family protein [Vibrio parahaemolyticus AQ3810],...	259.0	[0..13]	[217..1]
gi\|26991184, gi\|... - gi\|26991184\|ref\|NP_746609.1\| Sua5/YciO/YrdC/YwlC family protein [Pseudomonas putida KT2440], gi\|2498...	259.0	[0..1]	[218..1]

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Predicted Domain #1

Region A:
Residues: [1-218]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MGTAAEHHRE GIMSQFFYIH PDNPQQRLIN QAVEIVRKGG VIVYPTDSGY ALGCKIEDKN  60
   61 AMERICRIRQ LPDGHNFTLM CRDLSELSTY SFVDNVAFRL MKNNTPGNYT FILKGTKEVP 120
  121 RRLLQEKRKT IGMRVPSNPI AQALLEALGE PMLSTSLMLP GSEFTESDPE EIKDRLEKQV 180
  181 DLIIHGGYLG QKPTTVIDLT DDTPVVVREG VGDVKPFL

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	72.69897
Match:	1kk9A
Description:	Hypothetical protein YciO
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits