YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|110804405, gi...
Organism:	Shigella flexneri 5 str. 8401
Length:	112 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|110804405, gi....

Description	E-value	Query Range	Subject Range
gi\|24111674, gi\|... - gi\|24111674\|ref\|NP_706184.1\| hypothetical protein SF0229 [Shigella flexneri 2a str. 301], gi\|2405045...	139.0	[0..1]	[112..1]
gi\|30040045, gi\|... - gi\|30061803\|ref\|NP_835974.1\| hypothetical protein S0251 [Shigella flexneri 2a str. 2457T], gi\|300400...	138.0	[0..1]	[112..1]
gi\|83585696, gi\|... - gi\|83585696\|ref\|ZP_00924338.1\| hypothetical protein Ecol1_01003112 [Escherichia coli 101-1], gi\|1944... gi\|253325678, gi... - gi\|254287253\|ref\|YP_003053001.1\| hypothetical protein ECD_00331 [Escherichia coli BL21(DE3)], gi\|253... gi\|242376161, gi... - gi\|251783888\|ref\|YP_002998192.1\| hypothetical protein B21_00335 [Escherichia coli BL21], gi\|24237616... gi\|253972351, gi... - gi\|254160450\|ref\|YP_003043558.1\| hypothetical protein ECB_00331 [Escherichia coli B str. REL606], gi... tr\|A0A0X8UGX6\|A0... - Uncharacterized protein OS=Escherichia coli (strain K12) GN=C3026_01860 PE=4 SV=1	133.0	[0..7]	[112..1]
gi\|124528903, gi... - gi\|124528903\|ref\|ZP_01700088.1\| PsiF repeat protein [Escherichia coli B], gi\|124500240\|gb\|EAY47716.1... EG11401 - PsiF family protein / Predicted exported protein, phosphate starvation inducible, function unknown PSIF_ECOL6 - Phosphate starvation-inducible protein psiF OS=Escherichia coli O6 GN=psiF PE=4 SV=1 gi\|110342237, gi... - gi\|110640645\|ref\|YP_668373.1\| hypothetical protein ECP_0443 [Escherichia coli 536], gi\|110342237\|gb\|... gi\|188491217, gi... - gi\|75512443\|ref\|ZP_00734982.1\| hypothetical protein Ecol5_01003358 [Escherichia coli 53638], gi\|1884... gi\|190906232, gi... - gi\|75238712\|ref\|ZP_00722700.1\| hypothetical protein EcolF_01003370 [Escherichia coli F11], gi\|191173... gi\|192958094, gi... - gi\|75237234\|ref\|ZP_00721281.1\| hypothetical protein EcolE1_01001692 [Escherichia coli E110019], gi\|1... gi\|75230110, gi\|... - gi\|75230110\|ref\|ZP_00716614.1\| hypothetical protein EcolB7_01001657 [Escherichia coli B7A], gi\|19116... gi\|157079093, gi... - gi\|75189452\|ref\|ZP_00702719.1\| hypothetical protein EcolE_01002737 [Escherichia coli E24377A], gi\|15... gi\|75176856, gi\|... - gi\|75176856\|ref\|ZP_00696972.1\| hypothetical protein SboyB_01003189 [Shigella boydii BS512], gi\|18773... PSIF_ECOLI - Phosphate starvation-inducible protein psiF precursor - Escherichia coli gi\|85674525, gi\|... - gi\|89107255\|ref\|AP_001035.1\| hypothetical protein [Escherichia coli str. K-12 substr. W3110], gi\|856... EG11401 - PsiF family protein / Predicted exported protein, phosphate starvation inducible, function unknown gi\|189356030, gi... - gi\|189356030\|gb\|EDU74449.1\| phosphate starvation-inducible protein PsiF [Escherichia coli O157:H7 st... gi\|168761577, gi... - gi\|189367968\|gb\|EDU86384.1\| phosphate starvation-inducible protein PsiF [Escherichia coli O157:H7 st... gi\|254590962, gi... - gi\|254791562\|ref\|YP_003076399.1\| hypothetical protein ECSP_0446 [Escherichia coli O157:H7 str. TW143... gi\|189362415, gi... - gi\|189362415\|gb\|EDU80834.1\| phosphate starvation-inducible protein PsiF [Escherichia coli O157:H7 st... gi\|238860433, gi... - gi\|238899674\|ref\|YP_002925470.1\| hypothetical protein BWG_0268 [Escherichia coli BW2952], gi\|2388604... gi\|187768321, gi... - gi\|187768321\|gb\|EDU32165.1\| phosphate starvation-inducible protein PsiF [Escherichia coli O157:H7 st... gi\|188999371, gi... - gi\|188999371\|gb\|EDU68357.1\| phosphate starvation-inducible protein PsiF [Escherichia coli O157:H7 st... gi\|168786218, gi... - gi\|189373690\|gb\|EDU92106.1\| phosphate starvation-inducible protein PsiF [Escherichia coli O157:H7 st... gi\|168800254, gi... - gi\|189377429\|gb\|EDU95845.1\| phosphate starvation-inducible protein PsiF [Escherichia coli O157:H7 st... gi\|169756171, gi... - gi\|170021243\|ref\|YP_001726197.1\| hypothetical protein EcolC_3248 [Escherichia coli ATCC 8739], gi\|16... gi\|188015882, gi... - gi\|188015882\|gb\|EDU54004.1\| phosphate starvation-inducible protein PsiF [Escherichia coli O157:H7 st... gi\|215263538, gi... - gi\|215485466\|ref\|YP_002327897.1\| hypothetical protein E2348C_0320 [Escherichia coli O127:H6 str. E23... gi\|217326342, gi... - gi\|217326342\|ref\|ZP_03442426.1\| phosphate starvation-inducible protein PsiF [Escherichia coli O157:H... gi\|218552947, gi... - gi\|218552947\|ref\|YP_002385860.1\| hypothetical protein ECIAI1_0383 [Escherichia coli IAI1], gi\|218359... PSIF_ECOL6 - Phosphate starvation-inducible protein PsiF OS=Escherichia coli O6:H1 (strain CFT073 / ATCC 700928 /... gi\|218557294, gi... - gi\|218557294\|ref\|YP_002390207.1\| hypothetical protein ECS88_0378 [Escherichia coli S88], gi\|21836406... gi\|218425811, gi... - gi\|218688247\|ref\|YP_002396459.1\| hypothetical protein ECED1_0407 [Escherichia coli ED1a], gi\|2184258... gi\|218350577, gi... - gi\|218693845\|ref\|YP_002401512.1\| hypothetical protein EC55989_0393 [Escherichia coli 55989], gi\|2183... gi\|218698711, gi... - gi\|218698711\|ref\|YP_002406340.1\| hypothetical protein ECIAI39_0297 [Escherichia coli IAI39], gi\|2183... gi\|218430763, gi... - gi\|218703666\|ref\|YP_002411185.1\| hypothetical protein ECUMN_0422 [Escherichia coli UMN026], gi\|21843... gi\|169887806, gi... - gi\|170079971\|ref\|YP_001729291.1\| hypothetical protein ECDH10B_0341 [Escherichia coli str. K-12 subst... gi\|170680000, gi... - gi\|170680000\|ref\|YP_001742517.1\| phosphate starvation-inducible protein PsiF [Escherichia coli SMS-3... gi\|195938556 - gi\|195938556\|ref\|ZP_03083938.1\| hypothetical protein EscherichcoliO157_19357 [Escherichia coli O157:... gi\|208807988, gi... - gi\|208807988\|ref\|ZP_03250325.1\| phosphate starvation-inducible protein PsiF [Escherichia coli O157:H... gi\|208816012, gi... - gi\|208816012\|ref\|ZP_03257191.1\| phosphate starvation-inducible protein PsiF [Escherichia coli O157:H... gi\|208822891, gi... - gi\|208822891\|ref\|ZP_03263209.1\| phosphate starvation-inducible protein PsiF [Escherichia coli O157:H... gi\|209159049, gi... - gi\|209397649\|ref\|YP_002269022.1\| phosphate starvation-inducible protein PsiF [Escherichia coli O157:... gi\|209910855, gi... - gi\|209917596\|ref\|YP_002291680.1\| hypothetical protein ECSE_0405 [Escherichia coli SE11], gi\|20991085...	133.0	[0..7]	[112..1]
gi\|213612762 - gi\|213612762\|ref\|ZP_03370588.1\| hypothetical protein SentesTyp_09759 [Salmonella enterica subsp. ent... gi\|213647683 - gi\|213647683\|ref\|ZP_03377736.1\| hypothetical protein SentesTy_10612 [Salmonella enterica subsp. ente... gi\|213852999 - gi\|213852999\|ref\|ZP_03382531.1\| hypothetical protein SentesT_09131 [Salmonella enterica subsp. enter... gi\|213979879 - gi\|213979879\|ref\|ZP_03407138.1\| hypothetical protein Salmonellaentericaenterica_37508 [Salmonella en... gi\|198242742, gi... - gi\|198242742\|ref\|YP_002214337.1\| phosphate starvation-inducible protein PsiF [Salmonella enterica su... gi\|199602047, gi... - gi\|200389602\|ref\|ZP_03216213.1\| phosphate starvation-inducible protein PsiF [Salmonella enterica sub... gi\|213028378 - gi\|213028378\|ref\|ZP_03342825.1\| hypothetical protein Salmonelentericaenterica_41205 [Salmonella ente... gi\|213420448 - gi\|213420448\|ref\|ZP_03353514.1\| hypothetical protein Salmonentericaenterica_22958 [Salmonella enteri... gi\|238911483 - gi\|238911483\|ref\|ZP_04655320.1\| hypothetical protein SentesTe_10145 [Salmonella enterica subsp. ente... gi\|194450043, gi... - gi\|194450043\|ref\|YP_002044416.1\| hypothetical protein SeHA_C0481 [Salmonella enterica subsp. enteric... gi\|194470680, gi... - gi\|194470680\|ref\|ZP_03076664.1\| phosphate starvation-inducible protein PsiF [Salmonella enterica sub... gi\|197251519, gi... - gi\|197251519\|ref\|YP_002145364.1\| psiF repeat domain protein [Salmonella enterica subsp. enterica ser... gi\|197242462, gi... - gi\|197264207\|ref\|ZP_03164281.1\| phosphate starvation-inducible protein PsiF [Salmonella enterica sub... gi\|168240200, gi... - gi\|205340192\|gb\|EDZ26956.1\| phosphate starvation-inducible protein PsiF [Salmonella enterica subsp. ... gi\|205349986, gi... - gi\|205349986\|gb\|EDZ36617.1\| phosphate starvation-inducible protein PsiF [Salmonella enterica subsp. ... gi\|195631714, gi... - gi\|195631714\|gb\|EDX50234.1\| phosphate starvation-inducible protein PsiF [Salmonella enterica subsp. ... gi\|194444632, gi... - gi\|194444632\|ref\|YP_002039623.1\| phosphate starvation-inducible protein PsiF [Salmonella enterica su... lcl\|NC_016856.1_... - [gene=psiF] [protein=hypothetical protein] [protein_id=YP_005236070.1] [location=438410..438730] gi\|62178995, gi\|... - gi\|62178995\|ref\|YP_215412.1\| hypothetical protein SC0425 [Salmonella enterica subsp. enterica serova... gi\|214002271 - gi\|214002271\|ref\|ZP_03413006.1\| hypothetical protein Salmonellentericaenterica_18512 [Salmonella ent... gi\|224466747, gi... - gi\|224582220\|ref\|YP_002636018.1\| phosphate starvation-inducible protein PsiF [Salmonella enterica su... gi\|29142866, gi\|... - gi\|29142866\|ref\|NP_806208.1\| hypothetical protein t2480 [Salmonella enterica subsp. enterica serovar... gi\|16759362 - gi\|16759362\|ref\|NP_454979.1\| hypothetical protein STY0417 [Salmonella enterica subsp. enterica serov... gi\|16501653, gi\|... - gi\|25371759\|pir\|\|AG0549 phosphate starvation-inducible protein PsiF [imported] - Salmonella enterica... gi\|16418887, gi\|... - gi\|16763764\|ref\|NP_459379.1\| hypothetical protein STM0384 [Salmonella typhimurium LT2], gi\|16418887\|... gi\|161364799, gi... - gi\|161615435\|ref\|YP_001589400.1\| hypothetical protein SPAB_03206 [Salmonella enterica subsp. enteric... gi\|205323473, gi... - gi\|205323473\|gb\|EDZ11312.1\| phosphate starvation-inducible protein PsiF [Salmonella enterica subsp. ... gi\|205329518, gi... - gi\|205329518\|gb\|EDZ16282.1\| phosphate starvation-inducible protein PsiF [Salmonella enterica subsp. ... gi\|168232351, gi... - gi\|205333457\|gb\|EDZ20221.1\| phosphate starvation-inducible protein PsiF [Salmonella enterica subsp. ...	132.0	[0..7]	[112..1]
gi\|204927197, gi... - gi\|204927197\|ref\|ZP_03218399.1\| phosphate starvation-inducible protein PsiF [Salmonella enterica sub... gi\|197363382, gi... - gi\|197363382\|ref\|YP_002143019.1\| hypothetical protein SSPA2182 [Salmonella enterica subsp. enterica ... gi\|194736123, gi... - gi\|194736123\|ref\|YP_002113414.1\| phosphate starvation-inducible protein PsiF [Salmonella enterica su... gi\|197289477, gi... - gi\|197289477\|gb\|EDY28840.1\| phosphate starvation-inducible protein PsiF [Salmonella enterica subsp. ... gi\|56128718, gi\|... - gi\|56414461\|ref\|YP_151536.1\| hypothetical protein SPA2339 [Salmonella enterica subsp. enterica serov...	131.0	[0..7]	[112..1]
gi\|75256757, gi\|... - gi\|75256757\|ref\|ZP_00728362.1\| hypothetical protein EcolE2_01003330 [Escherichia coli E22], gi\|19306... gi\|75209941, gi\|... - gi\|75209941\|ref\|ZP_00710130.1\| hypothetical protein EcolB_01002885 [Escherichia coli B171], gi\|19442... gi\|157065583, gi... - gi\|75194604\|ref\|ZP_00704674.1\| hypothetical protein EcolH_01000383 [Escherichia coli HS], gi\|1571599...	131.0	[0..7]	[112..1]
gi\|82775717, gi\|... - gi\|82775717\|ref\|YP_402064.1\| induced by phosphate starvation [Shigella dysenteriae Sd197], gi\|812398...	114.0	[0..1]	[91..1]
gi\|48732216, gi\|... - gi\|77456802\|ref\|YP_346307.1\| PsiF [Pseudomonas fluorescens Pf0-1], gi\|77380805\|gb\|ABA72318.1\| phosph...	110.0	[0..7]	[110..1]
gi\|26991531, gi\|... - gi\|26991531\|ref\|NP_746956.1\| PsiF repeat protein [Pseudomonas putida KT2440], gi\|24986614\|gb\|AAN7042...	108.0	[0..4]	[110..9]

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Predicted Domain #1

Region A:
Residues: [1-112]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKRDGAMKIT LLVTLLFGLV FLTTVGAAER TLTPQQQRMT SCNQQATAQA LKGDARKTYM  60
   61 SDCLKNSKSA PGEKSLTPQQ QKMRECNNQA TQQSLKGDDR NKFMSACLKK AA

[Run NCBI BLAST on this sequence.]

Detection Method:

deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

		MCM Score	SCOP Match	SCOP Description
View	Download	0.839	a.24.13	Domain of the SRP/SRP receptor G-proteins

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits