YRC Public Data Repository - Protein Structure Prediction

Protein:	LAT_MOUSE
Organism:	Mus musculus
Length:	242 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for LAT_MOUSE.

Description	E-value	Query Range	Subject Range
LAT_RAT - Linker for activation of T-cells family member 1 OS=Rattus norvegicus GN=Lat PE=1 SV=1	388.0	[0..1]	[242..1]
gi\|30354173 - gi\|30354173\|gb\|AAH52340.1\| Linker for activation of T cells [Mus musculus]	369.0	[0..1]	[242..1]
gi\|2780223, gi\|1... - gi\|62739159\|ref\|NP_001014989.1\| linker for activation of T cells isoform b [Homo sapiens], gi\|627391...	327.0	[0..1]	[242..1]
gi\|114665040 - gi\|114665040\|ref\|XP_001147360.1\| PREDICTED: similar to 36 kDa phosphothyrosine protein [Pan troglody...	325.0	[0..1]	[242..1]
gi\|109128018 - gi\|109128018\|ref\|XP_001102058.1\| PREDICTED: similar to linker for activation of T cells isoform b [M...	316.0	[0..1]	[242..1]
gi\|73958612 - gi\|73958612\|ref\|XP_849910.1\| PREDICTED: similar to linker for activation of T cells isoform b [Canis...	254.0	[0..29]	[210..63]

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Predicted Domain #1

Region A:
Residues: [1-242]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MEADALSPVG LGLLLLPFLV TLLAALCVRC RELPVSYDST STESLYPRSI LIKPPQITVP  60
   61 RTPAVSYPLV TSFPPLRQPD LLPIPRSPQP LGGSHRMPSS QQNSDDANSV ASYENQEPAC 120
  121 KNVDADEDED DYPNGYLVVL PDSSPAAVPV VSSAPVPSNP DLGDSAFSVE SCEDYVNVPE 180
  181 SEESAEASLD GSREYVNVSP EQQPVTRAEL ASVNSQEVED EGEEEGVDGE EAPDYENLQE 240
  241 LN

[Run NCBI BLAST on this sequence.]

Detection Method:

MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits