YRC Public Data Repository - Protein Structure Prediction

Protein:	CLD5_MOUSE
Organism:	Mus musculus
Length:	218 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for CLD5_MOUSE.

Description	E-value	Query Range	Subject Range
gi\|73995965 - gi\|73995965\|ref\|XP_543546.2\| PREDICTED: similar to claudin 5 [Canis familiaris]	250.0	[0..1]	[218..85]
gi\|49333437 - gi\|49333437\|gb\|AAT64057.1\| claudin 3c [Takifugu rubripes]	237.0	[0..3]	[218..2]
CLDN5 - claudin 5 gi\|61359316, gi\|... - gi\|61359323\|gb\|AAX41700.1\| claudin 5 [synthetic construct], gi\|61359316\|gb\|AAX41699.1\| claudin 5 [sy... HGNC:2047\|MIM:60... - 5, 5, 5 ENSPTRT00000026261 - null	236.0	[0..1]	[218..1]
gi\|2772945 - gi\|2772945\|gb\|AAB96653.1\| BEC1 protein [Mus musculus]	236.0	[0..1]	[218..1]
CLD5_RAT - Claudin-5 OS=Rattus norvegicus GN=Cldn5 PE=1 SV=2	235.0	[0..1]	[218..1]
gi\|54020932, gi\|... - gi\|54020932\|ref\|NP_001005709.1\| claudin 3 [Xenopus (Silurana) tropicalis], gi\|49523224\|gb\|AAH75291.1...	235.0	[0..3]	[218..2]
gi\|50924892, gi\|... - gi\|50924892\|gb\|AAH79722.1\| MGC82990 protein [Xenopus laevis], gi\|148227415\|ref\|NP_001087400.1\| MGC82...	235.0	[0..3]	[218..2]
CLD5_BOVIN - Claudin-5 OS=Bos taurus GN=CLDN5 PE=2 SV=1	233.0	[0..1]	[218..1]
gi\|114685094 - gi\|114685094\|ref\|XP_530408.2\| PREDICTED: claudin 5 [Pan troglodytes]	231.0	[0..1]	[218..1]

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Predicted Domain #1

Region A:
Residues: [1-218]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MGSAALEILG LVLCLVGWVG LILACGLPMW QVTAFLDHNI VTAQTTWKGL WMSCVVQSTG  60
   61 HMQCKVYESV LALSAEVQAA RALTVGAVLL ALVALFVTLT GAQCTTCVAP GPVKARVALT 120
  121 GGALYAVCGL LALVPLCWFA NIVVREFYDP TVPVSQKYEL GAALYIGWAA SALLMCGGGL 180
  181 VCCGAWVCTG RPEFSFPVKY SAPRRPTANG DYDKKNYV

[Run NCBI BLAST on this sequence.]

Detection Method:	Pfam
Confidence:	37.920819
Match:	PF00822.11
Description:	No description for PF00822.11 was found.

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits