YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|110615202, gi...
Organism:	Shigella flexneri 5 str. 8401
Length:	78 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

[What does the above image mean?]

[Show Ginzu Version Information]

Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|110615202, gi....

Description	E-value	Query Range	Subject Range
LPP_ERWCT - Major outer membrane lipoprotein OS=Erwinia carotovora subsp. atroseptica GN=lpp PE=3 SV=1 gi\|253688819, gi... - gi\|253688819\|ref\|YP_003018009.1\| LPP repeat-containing protein [Pectobacterium carotovorum subsp. ca... gi\|255057139, gi... - gi\|255057139\|ref\|ZP_05309322.1\| LPP repeat-containing protein [Pectobacterium wasabiae WPP163], gi\|2... LPP_PECAS - Major outer membrane lipoprotein OS=Pectobacterium atrosepticum (strain SCRI 1043 / ATCC BAA-672) GN... gi\|227111740 - gi\|227111740\|ref\|ZP_03825396.1\| major outer membrane lipoprotein [Pectobacterium carotovorum subsp. ... gi\|227329829 - gi\|227329829\|ref\|ZP_03833853.1\| major outer membrane lipoprotein [Pectobacterium carotovorum subsp. ...	116.0	[0..1]	[78..1]
gi\|224964174 - gi\|224964174\|emb\|CAX55681.1\| Major outer membrane lipoprotein [Erwinia pyrifoliae] gi\|188028992, gi... - gi\|188533950\|ref\|YP_001907747.1\| Major outer membrane lipoprotein precursor (Murein-lipoprotein) [Er... LPP_ERWAM - Major outer membrane lipoprotein OS=Erwinia amylovora GN=lpp PE=3 SV=1	116.0	[0..1]	[78..1]
gi\|148508405 - gi\|148508405\|gb\|ABQ76177.1\| Lpp1 [Salmonella enteritidis] gi\|157083162, gi... - gi\|157145957\|ref\|YP_001453276.1\| hypothetical protein CKO_01710 [Citrobacter koseri ATCC BAA-895], g... LPP1_SALTI - Major outer membrane lipoprotein 1 OS=Salmonella typhi GN=lpp1 PE=3 SV=1 LPP1_SALTY - Major outer membrane lipoprotein 1 OS=Salmonella typhimurium GN=lpp1 PE=3 SV=1 gi\|16760531 - gi\|16760531\|ref\|NP_456148.1\| major outer membrane lipoprotein [Salmonella enterica subsp. enterica s... gi\|161503527, gi... - gi\|161503527\|ref\|YP_001570639.1\| hypothetical protein SARI_01603 [Salmonella enterica subsp. arizona... LPP1_SALTY - Major outer membrane lipoprotein 1 OS=Salmonella typhimurium (strain LT2 / SGSC1412 / ATCC 700720) G... gi\|29141708, gi\|... - gi\|29141708\|ref\|NP_805050.1\| major outer membrane lipoprotein [Salmonella enterica subsp. enterica s... lcl\|NC_016856.1_... - [gene=lpp] [protein=murein lipoprotein] [protein_id=YP_005237245.1] [location=complement(1469355..14... gi\|197261732, gi... - gi\|197261732\|ref\|ZP_03161806.1\| major outer membrane lipoprotein [Salmonella enterica subsp. enteric... gi\|62127601, gi\|... - gi\|62179968\|ref\|YP_216385.1\| murein lipoprotein, links outer and inner membranes [Salmonella enteric... gi\|197250408, gi... - gi\|197250408\|ref\|YP_002146662.1\| major outer membrane lipoprotein [Salmonella enterica subsp. enteri... LPP1_SALPA - Major outer membrane lipoprotein 1 OS=Salmonella paratyphi A (strain ATCC 9150 / SARB42) GN=lpp1 PE=... gi\|194738115, gi... - gi\|194738115\|ref\|YP_002114392.1\| major outer membrane lipoprotein [Salmonella enterica subsp. enteri... gi\|194469147, gi... - gi\|194469147\|ref\|ZP_03075131.1\| major outer membrane lipoprotein [Salmonella enterica subsp. enteric... gi\|204927464, gi... - gi\|204927464\|ref\|ZP_03218665.1\| major outer membrane lipoprotein [Salmonella enterica subsp. enteric... gi\|199603572, gi... - gi\|200391127\|ref\|ZP_03217738.1\| major outer membrane lipoprotein [Salmonella enterica subsp. enteric... gi\|197938789, gi... - gi\|198244273\|ref\|YP_002215750.1\| major outer membrane lipoprotein [Salmonella enterica subsp. enteri... gi\|197094051, gi... - gi\|197362574\|ref\|YP_002142211.1\| major outer membrane lipoprotein [Salmonella enterica subsp. enteri... gi\|205347540, gi... - gi\|205347540\|gb\|EDZ34171.1\| major outer membrane lipoprotein [Salmonella enterica subsp. enterica se... gi\|197288016, gi... - gi\|197288016\|gb\|EDY27403.1\| major outer membrane lipoprotein [Salmonella enterica subsp. enterica se... gi\|168233568, gi... - gi\|205332360\|gb\|EDZ19124.1\| major outer membrane lipoprotein [Salmonella enterica subsp. enterica se... gi\|205323603, gi... - gi\|205323603\|gb\|EDZ11442.1\| major outer membrane lipoprotein [Salmonella enterica subsp. enterica se... gi\|283785093\|ref... - major outer membrane lipoprotein (murein-lipoprotein) [Citrobacter rodentium ICC168] gi\|194448101, gi... - gi\|194448101\|ref\|YP_002045383.1\| major outer membrane lipoprotein [Salmonella enterica subsp. enteri... gi\|194402017, gi... - gi\|194443354\|ref\|YP_002040632.1\| major outer membrane lipoprotein [Salmonella enterica subsp. enteri... gi\|205341349, gi... - gi\|205341349\|gb\|EDZ28113.1\| major outer membrane lipoprotein [Salmonella enterica subsp. enterica se... gi\|195634397, gi... - gi\|195634397\|gb\|EDX52749.1\| major outer membrane lipoprotein [Salmonella enterica subsp. enterica se... gi\|224468639, gi... - gi\|224584112\|ref\|YP_002637910.1\| major outer membrane lipoprotein [Salmonella enterica subsp. enteri... gi\|214001029 - gi\|214001029\|ref\|ZP_03411764.1\| major outer membrane lipoprotein [Salmonella enterica subsp. enteric... LPP1_SALPA - Major outer membrane lipoprotein 1 OS=Salmonella paratyphi A GN=lpp1 PE=3 SV=1 gi\|213855847 - gi\|213855847\|ref\|ZP_03384087.1\| major outer membrane lipoprotein [Salmonella enterica subsp. enteric... gi\|213163075 - gi\|213163075\|ref\|ZP_03348785.1\| major outer membrane lipoprotein [Salmonella enterica subsp. enteric... gi\|209907774, gi... - gi\|209907774\|ref\|ZP_03282258.1\| hypothetical protein ENTCAN_02040 [Enterobacter cancerogenus ATCC 35... gi\|238913218 - gi\|238913218\|ref\|ZP_04657055.1\| major outer membrane lipoprotein [Salmonella enterica subsp. enteric... gi\|207857117, gi... - gi\|207857117\|ref\|YP_002243768.1\| major outer membrane lipoprotein [Salmonella enterica subsp. enteri... gi\|205352904, gi... - gi\|205352904\|ref\|YP_002226705.1\| major outer membrane lipoprotein [Salmonella enterica subsp. enteri... LPP1_SALTI - Major outer membrane lipoprotein 1 OS=Salmonella typhi GN=lpp1 PE=3 SV=1 gi\|213647215 - gi\|213647215\|ref\|ZP_03377268.1\| major outer membrane lipoprotein [Salmonella enterica subsp. enteric... LPP1_SALTY - Major outer membrane lipoprotein 1 OS=Salmonella typhimurium GN=lpp1 PE=3 SV=1 gi\|213623011 - gi\|213623011\|ref\|ZP_03375794.1\| major outer membrane lipoprotein [Salmonella enterica subsp. enteric... gi\|213428566 - gi\|213428566\|ref\|ZP_03361316.1\| major outer membrane lipoprotein [Salmonella enterica subsp. enteric... gi\|213418181 - gi\|213418181\|ref\|ZP_03351247.1\| major outer membrane lipoprotein [Salmonella enterica subsp. enteric...	116.0	[0..1]	[78..1]
gi\|62127600, gi\|... - gi\|62179967\|ref\|YP_216384.1\| putative methyl-accepting chemotaxis protein [Salmonella enterica subsp...	114.0	[0..1]	[76..18]
gi\|84779935, gi\|... - gi\|85059415\|ref\|YP_455117.1\| major outer membrane lipoprotein [Sodalis glossinidius str. 'morsitans'...	113.0	[0..1]	[78..1]
LPP_PHOLL - Major outer membrane lipoprotein OS=Photorhabdus luminescens subsp. laumondii GN=lpp PE=3 SV=1 LPP_PHOLL - Major outer membrane lipoprotein OS=Photorhabdus luminescens subsp. laumondii (strain DSM 15139 / CI...	111.0	[0..1]	[78..1]
gi\|157370426, gi... - gi\|157370426\|ref\|YP_001478415.1\| LPP repeat-containing protein [Serratia proteamaculans 568], gi\|157... gi\|77962192 - gi\|77962192\|ref\|ZP_00826015.1\| COG4238: Murein lipoprotein [Yersinia mollaretii ATCC 43969] gi\|77975292 - gi\|77975292\|ref\|ZP_00830828.1\| COG4238: Murein lipoprotein [Yersinia frederiksenii ATCC 33641] gi\|77979575 - gi\|77979575\|ref\|ZP_00834993.1\| COG4238: Murein lipoprotein [Yersinia intermedia ATCC 29909] tr\|U2NYH1\|U2NYH1... - Major outer membrane lipoprotein OS=Serratia fonticola AU-P3(3) GN=L580_0282 PE=4 SV=1, Major outer ... gi\|123442426, gi... - gi\|123442426\|ref\|YP_001006405.1\| major outer membrane lipoprotein [Yersinia enterocolitica subsp. en... gi\|77959200 - gi\|77959200\|ref\|ZP_00823222.1\| COG4238: Murein lipoprotein [Yersinia bercovieri ATCC 43970]	110.0	[0..1]	[78..1]
gi\|223967 - gi\|223967\|prf\|\|1006243A lipoprotein mutant	109.0	[0..1]	[78..1]
gi\|167424979, gi... - gi\|167424979\|ref\|ZP_02316732.1\| major outer membrane lipoprotein [Yersinia pestis biovar Mediaevalis... gi\|167422217, gi... - gi\|167422217\|ref\|ZP_02313970.1\| major outer membrane lipoprotein [Yersinia pestis biovar Orientalis ... gi\|108775658, gi... - gi\|108812010\|ref\|YP_647777.1\| hypothetical protein YPN_1848 [Yersinia pestis Nepal516], gi\|108775658... gi\|166210876, gi... - gi\|166210876\|ref\|ZP_02236911.1\| major outer membrane lipoprotein [Yersinia pestis biovar Antiqua str... gi\|165990389, gi... - gi\|166010687\|ref\|ZP_02231585.1\| major outer membrane lipoprotein [Yersinia pestis biovar Antiqua str... gi\|162419719, gi... - gi\|162419719\|ref\|YP_001606992.1\| major outer membrane lipoprotein [Yersinia pestis Angola], gi\|16235... gi\|45436836, gi\|... - gi\|45441973\|ref\|NP_993512.1\| major outer membrane lipoprotein [Yersinia pestis biovar Microtus str. ...	109.0	[0..1]	[78..4]
gi\|169750627, gi... - gi\|170024093\|ref\|YP_001720598.1\| LPP repeat-containing protein [Yersinia pseudotuberculosis YPIII], ... gi\|161511370 - gi\|161511370\|ref\|NP_993512.2\| major outer membrane lipoprotein [Yersinia pestis biovar Microtus str.... LPP_YERPS - Major outer membrane lipoprotein OS=Yersinia pseudotuberculosis GN=lpp PE=3 SV=1 gi\|89102005 - gi\|89102005\|ref\|ZP_01174677.1\| COG4238: Murein lipoprotein [Yersinia pestis biovar Orientalis str. I... gi\|108779647, gi... - gi\|108807734\|ref\|YP_651650.1\| major outer membrane lipoprotein [Yersinia pestis Antiqua], gi\|1087796... gi\|186698713, gi... - gi\|186895687\|ref\|YP_001872799.1\| LPP repeat-containing protein [Yersinia pseudotuberculosis PB1/+], ... LPP_YERPE - Major outer membrane lipoprotein OS=Yersinia pestis GN=lpp PE=3 SV=1 gi\|16122617, gi\|... - gi\|218929485\|ref\|YP_002347360.1\| major outer membrane lipoprotein [Yersinia pestis CO92], gi\|1612261... gi\|229837919, gi... - gi\|229837919\|ref\|ZP_04458078.1\| murein lipoprotein [Yersinia pestis biovar Orientalis str. PEXU2], g... LPP_YERPS - Major outer membrane lipoprotein OS=Yersinia pseudotuberculosis serotype I (strain IP32953) GN=lpp P... gi\|229895080, gi... - gi\|229895080\|ref\|ZP_04510257.1\| murein lipoprotein [Yersinia pestis Pestoides A], gi\|229701968\|gb\|EE... gi\|229902322, gi... - gi\|229902322\|ref\|ZP_04517442.1\| murein lipoprotein [Yersinia pestis Nepal516], gi\|229680657\|gb\|EEO76... gi\|149365695, gi... - gi\|149365695\|ref\|ZP_01887730.1\| major outer membrane lipoprotein [Yersinia pestis CA88-4125], gi\|149... gi\|77629378, gi\|... - gi\|77629378\|ref\|ZP_00791964.1\| COG4238: Murein lipoprotein [Yersinia pseudotuberculosis IP 31758], g...	107.0	[0..1]	[78..1]

Back

Predicted Domain #1

Region A:
Residues: [1-78]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKATKLVLGA VILGSTLLAG CSSNAKIDQL SSDVQTLNAK VDQLSNDVNA MRSDVQAAKD  60
   61 DAARANQRLD NMATKYRK

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	15.30103
Match:	1t8zA
Description:	Atomic Structure of A Novel Tryptophan-Zipper Pentamer
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits