YRC Public Data Repository - Protein Structure Prediction

Protein:	SPR2I_MOUSE
Organism:	Mus musculus
Length:	76 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for SPR2I_MOUSE.

Description	E-value	Query Range	Subject Range
LEVS_LACSN - Levansucrase OS=Lactobacillus sanfranciscensis GN=levS PE=1 SV=1	107.0	[0..3]	[74..751]
gi\|28379477, gi\|... - gi\|28379477\|ref\|NP_786369.1\| cell surface protein precursor [Lactobacillus plantarum WCFS1], gi\|2827...	104.0	[0..4]	[73..1177]
gi\|25388168 - pir\|\|F95013 pneumococcal surface protein A [imported] - Streptococcus pneumoniae (strain TIGR4) gi\|14971584, gi\|... - gi\|15900059\|ref\|NP_344663.1\| pneumococcal surface protein A [Streptococcus pneumoniae TIGR4], gi\|149...	92.0	[0..16]	[74..462]
gi\|91781279, gi\|... - gi\|91781279\|ref\|YP_556486.1\| Outer membrane autotransporter barrel protein [Burkholderia xenovorans ...	90.0	[0..2]	[75..605]
gi\|42733860, gi\|... - gi\|60471408\|gb\|EAL69368.1\| hypothetical protein DDB0169529 [Dictyostelium discoideum], gi\|42733860\|g... gi\|66819171, gi\|... - gi\|66819171\|ref\|XP_643245.1\| 5'-3' exoribonuclease [Dictyostelium discoideum AX4], gi\|60471408\|gb\|EA...	90.0	[0..7]	[69..1657]
gi\|94481968 - gi\|94481968\|gb\|ABF21668.1\| unknown [Human herpesvirus 3]	88.0	[0..6]	[73..2474]
gi\|116095803, gi... - gi\|116630221\|ref\|YP_815393.1\| hypothetical protein LGAS_1663 [Lactobacillus gasseri ATCC 33323], gi\|...	88.0	[0..4]	[74..2211]
TTN - titin	83.0	[0..6]	[72..10219]

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Predicted Domain #1

Region A:
Residues: [1-76]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSYQQQQCKQ PCQPPPVCPP KKCPEPCPPP QCPEPCPPPK CPEPCPESCP PPSYQQKCPP  60
   61 VQPPPPCQQK CPPKSK

[Run NCBI BLAST on this sequence.]

Detection Method:	FFAS03
Confidence:	0.953
Match:	2j63A
Description:	No description for 2j63A was found.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits