YRC Public Data Repository - Protein Structure Prediction

Protein:	PIGP_MOUSE
Organism:	Mus musculus
Length:	132 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for PIGP_MOUSE.

Description	E-value	Query Range	Subject Range
gi\|109065378 - gi\|109065378\|ref\|XP_001084945.1\| PREDICTED: similar to phosphatidylinositol N-acetylglucosaminyltran...	230.0	[0..1]	[132..429]
gi\|74001439 - gi\|74001439\|ref\|XP_535591.2\| PREDICTED: similar to phosphatidylinositol N-acetylglucosaminyltransfer...	213.0	[0..1]	[131..118]
PIGP - phosphatidylinositol glycan anchor biosynthesis, class P	197.0	[0..1]	[132..25]
gi\|153792709, gi... - gi\|27669812\|ref\|XP_213650.1\| PREDICTED: similar to Down syndrome critical region protein c [Rattus n...	195.0	[0..1]	[132..1]
gi\|30584449, gi\|... - gi\|60653415\|gb\|AAX29402.1\| Down syndrome critical region gene 5 [synthetic construct], gi\|30584449\|g...	194.0	[0..1]	[132..1]
PIGP_PONPY - Phosphatidylinositol N-acetylglucosaminyltransferase subunit P - Pongo pygmaeus (Orangutan) PIGP_PONAB - Phosphatidylinositol N-acetylglucosaminyltransferase subunit P OS=Pongo abelii GN=PIGP PE=2 SV=1	193.0	[0..1]	[132..1]

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Predicted Domain #1

Region A:
Residues: [1-132]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MVENSPSPLP ERAIYGFVLF LSSQFGFILY LVWAFVPESW LNSLGLTYWP QKYWAVALPV  60
   61 YLLITVVIGY VLLFGINMMS TSPLDSIHTI TDNYAKNQQR KNYQEDAIPA LRDVPISEVN 120
  121 KMFFLGAKEL NT

[Run NCBI BLAST on this sequence.]

Detection Method:	Pfam
Confidence:	67.200659
Match:	PF08510.3
Description:	No description for PF08510.3 was found.

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits