YRC Public Data Repository - Protein Structure Prediction

Protein:	CBLN3_MOUSE
Organism:	Mus musculus
Length:	197 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for CBLN3_MOUSE.

Description	E-value	Query Range	Subject Range
gi\|33585525 - gi\|33585525\|gb\|AAH55730.1\| Cbln1 protein [Mus musculus]	181.0	[0..20]	[197..35]
gi\|1093743 - gi\|1093743\|prf\|\|2104382A pre-cerebellin gi\|913895 - gi\|913895\|gb\|AAB33613.1\| cerebellin 1, Cbln1 [mice, brain, Peptide Partial, 193 aa]	179.0	[0..20]	[197..17]
gi\|49257616, gi\|... - gi\|49257616\|gb\|AAH74247.1\| MGC83990 protein [Xenopus laevis], gi\|147905600\|ref\|NP_001086139.1\| MGC83...	178.0	[0..18]	[197..36]
CBLN1 - cerebellin 1 precursor gi\|114662381 - gi\|114662381\|ref\|XP_001163762.1\| PREDICTED: similar to Cerebellin precursor (Precerebellin) [Pan tro...	177.0	[0..21]	[197..18]
CBLN1_RAT - Cerebellin-1 OS=Rattus norvegicus GN=Cbln1 PE=1 SV=2 gi\|73950418 - gi\|73950418\|ref\|XP_854506.1\| PREDICTED: similar to cerebellin 1 precursor protein [Canis familiaris] CBLN1_BOVIN - Cerebellin-1 OS=Bos taurus GN=CBLN1 PE=1 SV=1 gi\|149699058 - gi\|149699058\|ref\|XP_001488699.1\| PREDICTED: similar to Cerebellin-1 precursor (Precerebellin) [Equus...	177.0	[0..21]	[197..18]
gi\|109128448 - gi\|109128448\|ref\|XP_001082005.1\| PREDICTED: similar to cerebellin 1 precursor protein [Macaca mulatt...	175.0	[0..21]	[197..18]

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Predicted Domain #1

Region A:
Residues: [1-197]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MGTEWHKPKL SLALVLLTLE AGWAQEGSEP VLLEGECLVV CEPGRPTAGG PGGAALGEAP  60
   61 PGRVAFAAVR SHHHEPAGET GNGTSGAIYF DQVLVNEGEG FDRTSGCFVA PVRGVYSFRF 120
  121 HVVKVYNRQT VQVSLMLNTW PVISAFANDP DVTREAATSS VLLPLDPGDR VSLRLRRGNL 180
  181 LGGWKYSSFS GFLIFPL

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	37.09691
Match:	1gr3A
Description:	Collagen X NC1 trimerisation domain
Matching Structure (courtesy of the PDB):

Predicted functions:

Term	Confidence	Notes
binding	1.06501078410197	bayes_pls_golite062009
protein binding	0.971034959057578	bayes_pls_golite062009
receptor binding	0.732912948930345	bayes_pls_golite062009

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: