YRC Public Data Repository - Protein Structure Prediction

Protein:	SAP3_MOUSE
Organism:	Mus musculus
Length:	193 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for SAP3_MOUSE.

Description	E-value	Query Range	Subject Range
gi\|479912 - gi\|479912\|pir\|\|S35613 ganglioside M2 activator protein precursor - mouse	326.0	[0..1]	[193..1]
gi\|25006237 - gi\|25006237\|dbj\|BAC24018.1\| GM2 activator protein [Rattus norvegicus]	318.0	[0..15]	[193..21]
SAP3_MACFA - Ganglioside GM2 activator OS=Macaca fascicularis GN=GM2A PE=2 SV=2	317.0	[0..1]	[192..4]
gi\|109079384 - gi\|109079384\|ref\|XP_001109570.1\| PREDICTED: similar to GM2 ganglioside activator precursor [Macaca m...	317.0	[0..1]	[192..4]
GM2A - GM2 ganglioside activator	311.0	[0..19]	[192..19]

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Predicted Domain #1

Region A:
Residues: [1-193]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MHRLPLLLLL GLLLAGSVAP ARLVPKRLSQ LGGFSWDNCD EGKDPAVIKS LTIQPDPIVV  60
   61 PGDVVVSLEG KTSVPLTAPQ KVELTVEKEV AGFWVKIPCV EQLGSCSYEN ICDLIDEYIP 120
  121 PGESCPEPLH TYGLPCHCPF KEGTYSLPTS NFTVPDLELP SWLSTGNYRI QSILSSGGKR 180
  181 LGCIKIAASL KGR

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	81.39794
Match:	2agcA
Description:	Crystal Structure of mouse GM2- activator Protein
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits