YRC Public Data Repository - Protein Structure Prediction

Protein:	TPD53_MOUSE
Organism:	Mus musculus
Length:	204 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for TPD53_MOUSE.

Description	E-value	Query Range	Subject Range
gi\|114609317 - gi\|114609317\|ref\|XP_518724.2\| PREDICTED: similar to D53 [Pan troglodytes]	286.0	[0..1]	[204..108]
gi\|109072961 - gi\|109072961\|ref\|XP_001107364.1\| PREDICTED: similar to Tumor protein D53 (hD53) (Tumor protein D52-l...	283.0	[0..1]	[204..108]
gi\|73946315 - gi\|73946315\|ref\|XP_855485.1\| PREDICTED: similar to Tumor protein D53 (hD53) (Tumor protein D52-like ...	283.0	[0..8]	[204..102]
gi\|109460590 - gi\|109460590\|ref\|XP_001057883.1\| PREDICTED: similar to Tumor protein D53 (mD53) (Tumor protein D52-l...	281.0	[0..1]	[204..86]
TPD52L1 - tumor protein D52-like 1 ENSPTRT00000034303 - null	267.0	[0..1]	[204..1]
gi\|115496772, gi... - gi\|115496772\|ref\|NP_001069501.1\| tumor protein D52-like 1 [Bos taurus], gi\|111307582\|gb\|AAI20447.1\| ...	260.0	[0..1]	[204..1]
TPD53_CHICK - Tumor protein D53 homolog OS=Gallus gallus GN=TPD52L1 PE=2 SV=1	230.0	[0..1]	[204..1]

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Predicted Domain #1

Region A:
Residues: [1-204]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MEAQAQGLLE TEPLQGRDGD AVGSADFSSM LSEEEKEELK AELIQLEDEI TTLRQVLSAK  60
   61 ERHLVEIKQK LGMNLMNELK QNFSRSWHDM QTTTAYKKTH ETLSHAGQKA TAAFNNVGTA 120
  121 ISKKFGDMRY SIRHSISMPA MRNSSTFKSF EERVETTVAS LKTKVGGTNH GGGSFEEVLN 180
  181 STAHASSQNA SAGSRQTKDE ELQC

[Run NCBI BLAST on this sequence.]

Detection Method:	Pfam
Confidence:	117.060481
Match:	PF04201.6
Description:	No description for PF04201.6 was found.

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits