YRC Public Data Repository - Protein Structure Prediction

Protein:	SAA2_MOUSE
Organism:	Mus musculus
Length:	122 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for SAA2_MOUSE.

Description	E-value	Query Range	Subject Range
gi\|33086696 - gi\|33086696\|gb\|AAP92660.1\| Bq135360 [Rattus norvegicus]	240.0	[0..1]	[119..1]
gi\|109107121, gi... - gi\|109107121\|ref\|XP_001086242.1\| PREDICTED: serum amyloid A1 isoform 2 [Macaca mulatta], gi\|10910711...	232.0	[0..1]	[122..1]
gi\|56403588 - gi\|56403588\|emb\|CAI29596.1\| hypothetical protein [Pongo abelii] gi\|197101992 - gi\|197101992\|ref\|NP_001127066.1\| serum amyloid A2 [Pongo abelii]	232.0	[0..1]	[122..1]
gi\|40316910, gi\|... - gi\|49457476\|emb\|CAG47037.1\| SAA1 [Homo sapiens], gi\|40316912\|ref\|NP_000322.2\| serum amyloid A1 prepr...	232.0	[0..1]	[122..1]
gi\|60831774 - gi\|60831774\|gb\|AAX36983.1\| serum amyloid A1 [synthetic construct]	232.0	[0..1]	[122..1]
gi\|114636451 - gi\|114636451\|ref\|XP_001173019.1\| PREDICTED: similar to amyloid A protein isoform 3 [Pan troglodytes]	228.0	[0..1]	[122..1]

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Predicted Domain #1

Region A:
Residues: [1-122]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKLLTSLVFC SLLLGVCHGG FFSFIGEAFQ GAGDMWRAYT DMKEAGWKDG DKYFHARGNY  60
   61 DAAQRGPGGV WAAEKISDAR ESFQEFFGRG HEDTMADQEA NRHGRSGKDP NYYRPPGLPA 120
  121 KY

[Run NCBI BLAST on this sequence.]

Detection Method:	Pfam
Confidence:	71.275724
Match:	PF00277.9
Description:	No description for PF00277.9 was found.

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits