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View Structure Prediction Details

Protein: RM09_MOUSE
Organism: Mus musculus
Length: 265 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for RM09_MOUSE.

Description E-value Query
Range
Subject
Range
gi|26333571 - gi|26333571|dbj|BAC30503.1| unnamed protein product [Mus musculus]
343.0 [0..1] [265..1]
RM09_RAT - 39S ribosomal protein L9, mitochondrial OS=Rattus norvegicus GN=Mrpl9 PE=2 SV=1
324.0 [0..1] [259..1]
MRPL9 - mitochondrial ribosomal protein L9
309.0 [0..1] [263..1]
gi|114559523 - gi|114559523|ref|XP_513803.2| PREDICTED: mitochondrial ribosomal protein L9 isoform 3 [Pan troglodyt...
308.0 [0..1] [263..1]
gi|109016246 - gi|109016246|ref|XP_001108684.1| PREDICTED: similar to mitochondrial ribosomal protein L9 [Macaca mu...
304.0 [0..1] [263..1]
gi|73981588 - gi|73981588|ref|XP_851404.1| PREDICTED: similar to mitochondrial ribosomal protein L9 [Canis familia...
261.0 [0..38] [265..43]

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Predicted Domain #1
Region A:
Residues: [1-89]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAASVAPGVR TLWWAGAAWL RQGGIRELFR PRIEGSTPGR DFSLSHYQST VIVERWWKVP  60
   61 LAGEGRKPHL HRRHRVYKLV EDTKHRPKD

[Run NCBI BLAST on this sequence.]

Detection Method: deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #2
Region A:
Residues: [90-265]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 NLELILTQSV DEIGVRGDLV SVKKSVGRNK LLSQGLAVYA SPENRKLFEE EKSLRREGKL  60
   61 EKIQTKAGEA TVKFLRSCHL EVGMKNNVKW ELNPEIVARH FFKNLGVVVA PHALRLPEEP 120
  121 ITRWGEYWCD VTVNGLDTVR VPMSVVLFQK PKTKRYKHWL AQQAAKSVAP TNPQAV

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 43.522879
Match: 1p85F
Description: 70S ribosome functional complex
Matching Structure (courtesy of the PDB):

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle