YRC Public Data Repository - Protein Structure Prediction

Protein:	SDHF3_MOUSE
Organism:	Mus musculus
Length:	125 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for SDHF3_MOUSE.

Description	E-value	Query Range	Subject Range
SDHF3_RAT - Succinate dehydrogenase assembly factor 3, mitochondrial OS=Rattus norvegicus GN=Sdhaf3 PE=2 SV=2	211.0	[0..1]	[125..1]
gi\|114614664 - gi\|114614664\|ref\|XP_001171009.1\| PREDICTED: ACN9 homolog isoform 2 [Pan troglodytes]	202.0	[0..1]	[125..1]
ACN9 - ACN9 homolog (S. cerevisiae)	201.0	[0..1]	[125..1]
gi\|109067419 - gi\|109067419\|ref\|XP_001089986.1\| PREDICTED: ACN9 homolog (S. cerevisiae) [Macaca mulatta]	198.0	[0..1]	[125..1]
gi\|26389288 - gi\|26389288\|dbj\|BAC25710.1\| unnamed protein product [Mus musculus]	195.0	[0..8]	[125..1]
gi\|73976411 - gi\|73976411\|ref\|XP_852786.1\| PREDICTED: similar to ACN9 homolog [Canis familiaris]	186.0	[0..1]	[125..1]
SDHF3_BOVIN - Succinate dehydrogenase assembly factor 3, mitochondrial OS=Bos taurus GN=SDHAF3 PE=2 SV=1	182.0	[0..1]	[125..1]
CE23682 - status:Confirmed UniProt:P91989 protein_id:CAB02994.2	162.0	[0..6]	[123..13]
gi\|39592968, gi\|... - gi\|39592968\|emb\|CAE62582.1\| Hypothetical protein CBG06696 [Caenorhabditis briggsae], gi\|187034242\|em...	158.0	[0..6]	[122..13]

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Predicted Domain #1

Region A:
Residues: [1-125]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MPGKHVSRVR ALYRRILLLH RALPPDLKAL GDQYVKDEFR RHKTVGPGEA QRFLKEWETY  60
   61 AAVLWQQAED SRQSSTGKAC FGTSLPEEKL NDFRDEQIGQ LQELMQEATK PNRQFSITES 120
  121 TKPQL

[Run NCBI BLAST on this sequence.]

Detection Method:	Pfam
Confidence:	60.124939
Match:	PF05882.4
Description:	No description for PF05882.4 was found.

Shown below is our most confident prediction for this domain.
Click here to view all matches.

		MCM Score	GO Score	GO Term	SCOP Match	SCOP Description
View	Download	0.938	N/A	N/A	a.29.13	Description not found.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits