YRC Public Data Repository - Protein Structure Prediction

Protein:	MAFF_MOUSE
Organism:	Mus musculus
Length:	156 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for MAFF_MOUSE.

Description	E-value	Query Range	Subject Range
gi\|76654393 - gi\|76654393\|ref\|XP_876322.1\| PREDICTED: similar to Transcription factor MafK (Erythroid transcriptio...	129.0	[0..4]	[156..148]
gi\|109482561, gi... - gi\|194474012\|ref\|NP_001124045.1\| v-maf musculoaponeurotic fibrosarcoma oncogene homolog F [Rattus no...	122.0	[0..1]	[156..1]
gi\|30585181, gi\|... - gi\|61370635\|gb\|AAX43528.1\| v-maf musculoaponeurotic fibrosarcoma oncogene-like F [synthetic construc...	120.0	[0..1]	[156..1]
MAFF - v-maf musculoaponeurotic fibrosarcoma oncogene homolog F (avian)	120.0	[0..1]	[156..1]
gi\|109094174, gi... - gi\|109094176\|ref\|XP_001092994.1\| PREDICTED: v-maf musculoaponeurotic fibrosarcoma oncogene homolog F...	119.0	[0..1]	[156..1]
gi\|67773400 - gi\|67773400\|gb\|AAY81957.1\| c-Maf long form [Mus musculus]	118.0	[0..11]	[130..243]
gi\|209628 - gb\|AAA42377.1\| AS42-specific fusion protein gi\|209628 - gi\|209628\|gb\|AAA42377.1\| AS42-specific fusion protein	117.0	[0..22]	[130..524]
MAFF_CHICK - Transcription factor MafF OS=Gallus gallus GN=MAFF PE=2 SV=1	116.0	[0..1]	[150..1]

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Predicted Domain #1

Region A:
Residues: [1-156]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAVDPLSSKA LKVKRELSEN TPHLSDEALM GLSVRELNRN LRGLSAEEVT RLKQRRRTLK  60
   61 NRGYAASCRV KRVCQKEELQ KQKSELEREV DKLARENAAM RLELDALRGK CEALQGFARS 120
  121 VAAARGPAAL VAPASVITIV KSAPGPAPAA DPAPCS

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	3.30103
Match:	1i84S
Description:	Heavy meromyosin subfragment
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits